Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1254 ATGGACGGTAACGGAGGGGGCAACAGAGCCGAAGCTGAGCGATGGCTTTACACCGCCAACAAACTACTCAGCGCGCGTGACTTGCACGGGGCTCGCTCATTCGCGATCCGGGCCCGAGAGTCCGACCCCACATTCGACCCGACCGATCTACTCCTCACCGTCATCGACACACTCATCGCCGGCGAGCCTCCGATCAACGGCCACCTCGACTATTACGCCATCCTTCAAATCCTCCGTTACACTCCCAACATCGAGTTCATCGCCGCTCAGTACCGCCGCCTCACCATCCTCCTCGACCCTCACCACAACCCCTTCGCCTTCGCCTCTCATGCCTTCACCCTCGTTCACGACGCTTGGTCTGTTCTTTCCAACCCCACCAAGAAAGCCATATACGACAACGAACTTAGGTTGCTAACTCAACCACCACCACCTCCTCCCCCTCCTCCTCCTCCGCCGCCTCCGCCTCCGCCTGCTCCTCCGGCTCCGACTGCTTTTTTTCCGATTCCGCCGCTGAACGCTAACCTCACTCCGAACCTCAACCAACAGCCTCAGAGGATAAGCCCTAGTGCAGTGACGGAGGAAGAGAAGACGAGTCGCGATGACAATGTGAGCGAGTTCCCTCGCCCGAGTGAGACCGAGGGGGCGAGTTTCTGGACCGCGTGTCCCTACTGTTATGTTATGTATGAGTATCCCAAGGTTTATGAGGAGTGTACTCTACGGTGCCAGAGTTGCCGGAGAGGGTTTCATGCGGTGGTGGTGCGGTCACCGCCGGGGTTGACTTCGAAAGACCATTCATATTGCAGTTGGGGGTTTTTTCCTTTAGGGTTTTCTGGAAATTTTAAGGATATTAGTGGCTCTGCTTCCGAATGGAACCCTTTTTCTCCTTTGTTTCCTTGTCCTGCGACGGGTGGTTCCAATAGGAGGTATCGGAAGGGGCCTTGGGTTTTTTATGATGACGACGCCACGGCTGCTTTTGTGGAGCTTTCCGACGCGACGGAGGATGATTCCGATGATGAGGATTGGCGGTACGTGAATGAAAATAAGAAGGGGAAGAAGAAGCGGAGGCGGAGGAAGAGGAAAAGTTCTGCTGCTGCTAAGGCCGGTGACGGTGGGAGTGATGTTAGAAGTGCACTATTTGAGAGACCTAGAAGGGGGATTCATAATAGTGCTGGCAATGGCACAGTGGGTAATGGCGAGGCTGTGGATGGAGCCTCTTCGGTGCCCATTGGGCCGAAGCAGGAATCTAGCAAGAAAGCTGTGTTGGGGGTTTCCAGGAGGAGGGGTGAGAGGAACTTGGGGAAGTTGGATTTGAATGTTGAGTTTAGCAATGAGGTGGAAGAGCCTGTTCCTGGTTTGAGTGGAGAGAATGGGACTGGAAATGCCGAGGATAATATTGAAGGGATTGGGTTTTTTGAGGGGCTTGATGAATTTCTCAGTAGCTTGCCTATTCTTAATGTTGTTGCAGATGATAAGGTTAAGGGTCATTAG 1488 0.5383 MDGNGGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPTFDPTDLLLTVIDTLIAGEPPINGHLDYYAILQILRYTPNIEFIAAQYRRLTILLDPHHNPFAFASHAFTLVHDAWSVLSNPTKKAIYDNELRLLTQPPPPPPPPPPPPPPPPPAPPAPTAFFPIPPLNANLTPNLNQQPQRISPSAVTEEEKTSRDDNVSEFPRPSETEGASFWTACPYCYVMYEYPKVYEECTLRCQSCRRGFHAVVVRSPPGLTSKDHSYCSWGFFPLGFSGNFKDISGSASEWNPFSPLFPCPATGGSNRRYRKGPWVFYDDDATAAFVELSDATEDDSDDEDWRYVNENKKGKKKRRRRKRKSSAAAKAGDGGSDVRSALFERPRRGIHNSAGNGTVGNGEAVDGASSVPIGPKQESSKKAVLGVSRRRGERNLGKLDLNVEFSNEVEEPVPGLSGENGTGNAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1254 495 CDD DnaJ 70 124 IPR001623 -
Apr1g1254 495 MobiDBLite consensus disorder prediction 136 164 - -
Apr1g1254 495 Pfam DnaJ domain 70 132 IPR001623 -
Apr1g1254 495 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Apr1g1254 495 MobiDBLite consensus disorder prediction 192 207 - -
Apr1g1254 495 SMART dnaj_3 69 127 IPR001623 -
Apr1g1254 495 Gene3D DnaJ domain 66 140 IPR036869 -
Apr1g1254 495 SUPERFAMILY Chaperone J-domain 63 136 IPR036869 -
Apr1g1254 495 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 495 - -
Apr1g1254 495 MobiDBLite consensus disorder prediction 348 362 - -
Apr1g1254 495 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
Apr1g1254 495 MobiDBLite consensus disorder prediction 176 213 - -
Apr1g1254 495 MobiDBLite consensus disorder prediction 138 164 - -
Apr1g1254 495 MobiDBLite consensus disorder prediction 176 191 - -
Apr1g1254 495 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 5 495 - -
Apr1g1254 495 MobiDBLite consensus disorder prediction 347 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1254 Apr-Chr1 21243519 21248249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1254 11 494 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 39.960 1.11e-96 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1254 - - ccaj:109804406 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1968 3 35694256 35696019 Apr1g1254 1 21243519 21248249 PCT