Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1241 ATGTCTCCCTCCGACACCAAGAAGAAGAAGCACCGCAGCACCAAACAAGATGACGAAACCAACGACAAGGAGGATTTGATGATCAAACCGCAAAGCTTCACACCCCCAATCGACACTTCCCAGTGGCCAATCCTTCTCAAGAACTACGACCGCCTCAACGTTCGAACCGGACACTACACCCCCATCCCCTCCGGTTACTCTCCGCTCAAACGCCCTCTCACCGAATACCTCAAGTACGGTGTTCTCAACCTCGACAAACCCGCTAACCCCTCTTCCCACGAGGTTGTCGCTTGGATCAAACGCCTCCTTCGTGTCGAGAAAACCGGTCACAGCGGTACCCTCGACCCCAAAGTCACCGGCAACCTCATCGTCTGCATTGACCGTGCCACGCGCTTGGTCAAGTCCCAACAGGGTGCCGGAAAAGAGTACGTCTGCGTCGCTCGCTTGCATTCCTCTGTTCCCGATGTTTCCAAGGTCGCTCGCGCCCTTGAGACCCTCACCGGCGCCGTTTTCCAGCGCCCGCCGCTCATCTCCGCCGTCAAGCGCCAGCTTCGGATTCGGACTATCTACGAAAGTAAGCTTCTTGAGTATGACCCTGATAGGCATCTTGTTGTTTTCTGGATTTCATGTGAGGCTGGGACCTATGTTAGGACCATGTGTGTTCATTTGGGGCTGCTTCTTGGTGTTGGGGGACACATGCAGGAGCTTAGGAGGGTTCGTTCCGGGATCATGGGTGAGAAGGATAACATGGTTTCCATGCATGATGTGATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTGTTGACTAGTTATAAGAGGTTGGTTGTCAAGGATTCTGCTGTTAATGCCATTTGTTATGGTGCCAAGTTGATGATCCCCGGTTTGCTTAGGTTTGAGAATGACATTGATGTTGGGGAGGAGGTTGTGCTCATGACCACCAAGGGTGAGGCTATTGCCCTTGGGATTGCTGAGATGACTACTGCTGTCATGGCTACTTGTGATCATGGTGTTGTCGCCAAGATCAAGAGGGTCGTCATGGATCGGGACACTTATCCCAGGAAATGGGGTTTGGGTCCCAGGGCCTCCATGAAGAAGAAACTCGTTGCTGAAGGCAAGTTGGATAAGCACGGGAAGCCAAATGAGAAAACTCCCCAAGAGTGGCTTAGGAATCTGGTTTTGCCTGCTGGTGGGGATAGCATGATTGCGGGAATGGCTGCTGCTCCTGAACCTGAGGCTGCCAAGAAAGAGATTGCTACTGTGGATGGGGAAGGCCGTAAGAGAAAGAAGCATGATAGCACCGATAGCCCCACCTCACTTCCTGCTAAGAAGGTGAAGGTTGATGAAGTGCAAGAGGTTGAAAAGCTAGAAAAGGTGAAGATGAAGAAGAAGAAAAAGAAGAAGGATAAGGATAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAAGTGGAAAAGAGAAGAAAAAGAAGAACAAGGATAAGGTTGAGGATGGTTCGCCCAATGTAGACAAGTCTGAAAAGAAAAAGAAGAAGAAGAAGGACAAGGAAGCTGAAGATAATGCTGCTGATATTAGTAATGGGAAGGATGACGATAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCTGAGGAGGAATAG 1701 0.4932 MSPSDTKKKKHRSTKQDDETNDKEDLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLTEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLVAEGKLDKHGKPNEKTPQEWLRNLVLPAGGDSMIAGMAAAPEPEAAKKEIATVDGEGRKRKKHDSTDSPTSLPAKKVKVDEVQEVEKLEKVKMKKKKKKKDKDNGEVASSDEEKSGKEKKKKNKDKVEDGSPNVDKSEKKKKKKKDKEAEDNAADISNGKDDDNADKSEKKKHKKKKNKDAEEE* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1241 566 MobiDBLite consensus disorder prediction 459 473 - -
Apr1g1241 566 MobiDBLite consensus disorder prediction 433 451 - -
Apr1g1241 566 SUPERFAMILY PUA domain-like 286 367 IPR015947 -
Apr1g1241 566 SMART pua_5 287 361 IPR002478 GO:0003723
Apr1g1241 566 Pfam TruB family pseudouridylate synthase (N terminal domain) 100 216 IPR002501 GO:0006396
Apr1g1241 566 Pfam DKCLD (NUC011) domain 39 96 IPR012960 -
Apr1g1241 566 SUPERFAMILY Pseudouridine synthase 39 284 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr1g1241 566 Gene3D Pseudouridine synthase 72 278 - -
Apr1g1241 566 TIGRFAM unchar_dom_2: uncharacterized domain 2 282 358 IPR004521 GO:0003723
Apr1g1241 566 Gene3D PUA domain 39 370 IPR036974 GO:0003723
Apr1g1241 566 CDD PseudoU_synth_hDyskerin 78 260 - -
Apr1g1241 566 Coils Coil 546 566 - -
Apr1g1241 566 Pfam PUA domain 287 359 IPR002478 GO:0003723
Apr1g1241 566 MobiDBLite consensus disorder prediction 1 26 - -
Apr1g1241 566 ProSiteProfiles PUA domain profile. 286 361 - -
Apr1g1241 566 MobiDBLite consensus disorder prediction 482 551 - -
Apr1g1241 566 Pfam tRNA pseudouridylate synthase B C-terminal domain 217 283 IPR032819 -
Apr1g1241 566 MobiDBLite consensus disorder prediction 1 32 - -
Apr1g1241 566 MobiDBLite consensus disorder prediction 433 566 - -
Apr1g1241 566 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 7 565 - -
Apr1g1241 566 TIGRFAM CBF5: putative rRNA pseudouridine synthase 46 371 IPR004802 GO:0006396
Apr1g1241 566 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 7 565 IPR004802 GO:0006396
Apr1g1241 566 SMART DKCLD_2 38 96 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1241 Apr-Chr1 21165677 21167767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1241 4 460 NAC Transcription Factor Family AT3G57150 84.683 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1241 K11131 - gmx:100806355 850.892