Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1240 ATGGGGCTGCATCACAGAAAGTTGATACCAGATATCTGTCAGTTAATTTGTCATGTGAAGGATTCCGAGCCTTGTTCATCAGATTGCACAGTTTGCCTCAAGATCTGTTTAACCAATCCACCCCAAATTACCTATGATTCTCCTCCATCACCACCACCACAAGTTCCTCCTCTCTACTTATATGGTGATGAAGAACAAGGAAACAACCACAACATCTCCACCTATTTGATCCTCACTCTTGCTCTTCTAATTGCTGCTTTCTTTATTGTTTGTTGCCGTGCTATTTACACCAGGTTTTCCTCGAGGAGGAGGGTATCTTCAAGGCAGCAAACACAACAGAACCATGATGATTTTCTTGATGAAGAACATGGTCCTGTTGTGGACCACCCCATCTGGTATATCCGCACTCCTGGTCTCCAACAATCAATTATCAATGCTATCACGGTTTGTAAGTACAAGAGAGGAGAGGGCTTGATTGAAGGGACTGAGTGTTCTGTTTGCTTGAGTGAGTTCCAAGAGGATGAGAATCTGAGACTTTTGCCAAAATGTCATCATGCTTTTCATTTACCTTGTATTGATACCTGGCTGAGATCCCATACCAATTGCCCCATGTGCCGGGCTCCCATTGTTAGCAATCCTGTAACAGCTAGTGTGGTGTCTAATGTTGTTGGTTCAAGTTCCTTGGAAAATACCCACATGGAAGTTTTGGAAAATAGTGGTGAAACCAGTGGGGGAATGGAAAGTAGTGCTCCTGATTCTGAATTGAGGAATAGGGAAGAGGAAGAAGGCCAATTGGAAGTTGAAGAAGGAATAGGGGTGTGTGAAACTGGAAGCCCAGTTGCAGAGGTGGCATGCATTCATCCTAGAAGATCTGTTTCTCTGGATTCTTCTTATGTTGCAAATATCAATCTTGCTCTAGCAACGGTTCTATCAGTGGAACCTAATGGTAATTCAAATAGAGTGCTGGGAGGTGTTGATGACCCTGGTGGTTCAAAGGGGGTTAGTGGAAACGATTTCCCAACTACTTCTAAAGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTAGTTCAATGAACAGGTCACAATCCTACAACGGGAAATACCTTCTATCCTGGTATGGCCGCAGTCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTAA 1176 0.4362 MGLHHRKLIPDICQLICHVKDSEPCSSDCTVCLKICLTNPPQITYDSPPSPPPQVPPLYLYGDEEQGNNHNISTYLILTLALLIAAFFIVCCRAIYTRFSSRRRVSSRQQTQQNHDDFLDEEHGPVVDHPIWYIRTPGLQQSIINAITVCKYKRGEGLIEGTECSVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVSNPVTASVVSNVVGSSSLENTHMEVLENSGETSGGMESSAPDSELRNREEEEGQLEVEEGIGVCETGSPVAEVACIHPRRSVSLDSSYVANINLALATVLSVEPNGNSNRVLGGVDDPGGSKGVSGNDFPTTSKGSSSFRLTRYLQGVPSSMNRSQSYNGKYLLSWYGRSQKKPNAPLRSF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1240 391 CDD RING-H2_EL5_like 163 206 - -
Apr1g1240 391 SMART ring_2 164 205 IPR001841 -
Apr1g1240 391 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 382 IPR044675 -
Apr1g1240 391 SUPERFAMILY RING/U-box 158 212 - -
Apr1g1240 391 MobiDBLite consensus disorder prediction 236 250 - -
Apr1g1240 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 213 IPR013083 -
Apr1g1240 391 MobiDBLite consensus disorder prediction 236 267 - -
Apr1g1240 391 MobiDBLite consensus disorder prediction 320 347 - -
Apr1g1240 391 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 382 - -
Apr1g1240 391 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Apr1g1240 391 Pfam Ring finger domain 163 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1240 Apr-Chr1 21163564 21165006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1240 72 256 C3H Transcription Factor Family AT1G72220 48.469 6.75e-49 169