Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1235 ATGGAGAATAACGCATTGAAAGATGAAAACGAACACCAAGAAATCTTCGAACCCTTTGTTTGCTGTGTTTGCCTGGATCTATTACACAAGCCTATTGTGCTATCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCATAAATCAATGAGTGGTTTGCATGAGTCTCATTGTCCGATTTGTAGGCATCCATACTATCACTTTCCAACGATCTGTCAAATGCTTCACTATTTGCTTCTTAAGATCTATCCTGATGCTTACAGGAGGAGGGAAAAGGAGATGCTTGAGAAAGAAGAGGATATGGGCTGTTTCTCCCCTCAGTTTGATGCTTGTACATGTGGATCACAAGTTGTATCTGATCACCCTGGGATTTCACCTTCCTGTAACATTAAAAATTCAGTGTCCAACTCATGCAGCATAGAATCCTTTGGAAGTATGGAGCAATCAGGATCTGCAACTCATAAAGGAGATGAAGACAGTCAAGGCACCACCATATATTCTGAGCACTCTTCTGACAGAACACCTGAAGTTATCGGGACTCCTGATGATGAAAAGAAATTACGTAATAATGATCACAATCAACAAGAAATATTAATTGCAGATGTGATGTGTACAATGTGCAAGCAGCTTCTCTTTCATCCAGTTGTTCTTAATTGTGGTCATGTATACTGTGAGACTTGTATAATTAACGTAGCTGAAGAGATGCTTAGATGTCATGTTTGTCAAAGTCCACATCCAAGAGGATTACCAAGAGTTTGTTTGACGCTTGATCACTTTTTGGCTGAGCGATTTCCAAATGAATATGCTCAGCGAAGGGATGCAATTCAACTTGCCCAAATCAAAGTCAAACCTGAGACCACATCATGTTCTTTGCATAATGGTAAAGGAGGAACGATATCGCCATGGTCTGATCCCAGATTGAACACTCATGTAGGAGTTGGTTGTGATTTTTGTGGGATGTACCCAATAACTGGGGACAGATATAGATGCCTTGACTGTAAGGAGCAGATTGGTTTTGATCTTTGTGGTGATTGCTATAAGACCAGCTCAAAGCTTCCTGGCCGATTTAATCAGCAGCACACCCCTGAACACAGGTTCGAGCTTCAATGA 1107 0.411 MENNALKDENEHQEIFEPFVCCVCLDLLHKPIVLSCGHISCFWCVHKSMSGLHESHCPICRHPYYHFPTICQMLHYLLLKIYPDAYRRREKEMLEKEEDMGCFSPQFDACTCGSQVVSDHPGISPSCNIKNSVSNSCSIESFGSMEQSGSATHKGDEDSQGTTIYSEHSSDRTPEVIGTPDDEKKLRNNDHNQQEILIADVMCTMCKQLLFHPVVLNCGHVYCETCIINVAEEMLRCHVCQSPHPRGLPRVCLTLDHFLAERFPNEYAQRRDAIQLAQIKVKPETTSCSLHNGKGGTISPWSDPRLNTHVGVGCDFCGMYPITGDRYRCLDCKEQIGFDLCGDCYKTSSKLPGRFNQQHTPEHRFELQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1235 368 PANTHER UNCHARACTERIZED 8 367 - -
Apr1g1235 368 SMART zz_5 308 357 IPR000433 GO:0008270
Apr1g1235 368 Pfam RING-type zinc-finger 203 227 IPR027370 -
Apr1g1235 368 Gene3D - 304 367 IPR043145 -
Apr1g1235 368 SUPERFAMILY RING/U-box 301 366 - -
Apr1g1235 368 SUPERFAMILY RING/U-box 10 70 - -
Apr1g1235 368 ProSiteProfiles Zinc finger ZZ-type profile. 309 368 IPR000433 GO:0008270
Apr1g1235 368 ProSitePatterns Zinc finger ZZ-type signature. 314 344 IPR000433 GO:0008270
Apr1g1235 368 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Apr1g1235 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Apr1g1235 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 270 IPR013083 -
Apr1g1235 368 MobiDBLite consensus disorder prediction 145 173 - -
Apr1g1235 368 MobiDBLite consensus disorder prediction 145 188 - -
Apr1g1235 368 MobiDBLite consensus disorder prediction 174 188 - -
Apr1g1235 368 ProSiteProfiles Zinc finger RING-type profile. 203 241 IPR001841 -
Apr1g1235 368 Pfam Zinc finger, C3HC4 type (RING finger) 20 64 - -
Apr1g1235 368 SMART ring_2 21 60 IPR001841 -
Apr1g1235 368 SMART ring_2 203 240 IPR001841 -
Apr1g1235 368 ProSiteProfiles Zinc finger RING-type profile. 21 61 IPR001841 -
Apr1g1235 368 Pfam Zinc finger, ZZ type 309 349 IPR000433 GO:0008270
Apr1g1235 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 8 367 - -
Apr1g1235 368 SUPERFAMILY RING/U-box 196 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1235 Apr-Chr1 21103107 21121922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1235 10 61 C3H Transcription Factor Family AT1G74990 39.623 4.19e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1235 - - aprc:113868764 793.882