Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1232 ATGGTTGGGAATGGAAATGGAAATGGAAATGGAAACAGCAAGGATGGGTTTTTACCAGACGACGTCCTCATCAACATTCTGAAAAGGGTTCTTGTCAAATCCTTAATTCGATTCAAATGTGTCTCCAAAGATTGGTTAAACCTCTTACAAACCCCTTATTTCACTGAACAACATCTTCACCACTCTTCCCACAACAGCACCTTTCTTCTCCTCCAACGAATCCCTCATTCATTTCATCGTCCTTCACTAACCGCTTCCGAGTGTTTGATTGGACCCGACTTTACCGTTCACCATCCCCAATTCATCGATTTCACTTCACCCGATGCTATGATTGTTGGTTCCTGCAACGGCTTGTTATGCGTTAGACACTCCAACTACAAGCTTTCCCTTTTCAACCCAGCAACAAGGCAAATCAGACATATACCTGAAACCCTAATTCACGTCAAAAGCTGTTATTACGTTGGATTTGGTTTCAGTCCTGTTGTCAATGATTACAAGATTGTTAGAATTTCGCTCTCTGAGTTGAATGATGAGGATGGGATTGTGGTTCTTGATAACGTTAGGGTTAATCGAGCTGAAGTGTATTCTTTAAGAACCGGTTCTTGGAAAGAGATTGATGCCCTCGTTTTGCAAAGCCTGGGTCTTTGGTCTAATTCTGTCACTAACAATGGTGCTATATTTTGGCAAGCCACCATGACCGAATCTGATCATGAATTTGTGATTTCATTTGACATTGCAGAGGAAGTGTTTACCCTGTTAGAAGGTCCTCCAACTTCACCTGCTATTTGTTATAGCCATGTCCTTGCAGTTCATAATGATAAACTTGCTATGTTTCGCTATGCTGTTATTGGGAACTATGAATCTTGTTCCATTGATTTGTGGGTGTTGGAAAATAATGGTACATGTGCTGTGGCTGGTGAGAGTTGGATTAAGATGTATAGTGTGAGGCCCCTTTCAGGAATTTTGTATCCACTGAGTATTTGGAGAGATTTAATTGTTTGCTGGGAAGAATCCGGTGGATATGGCGATGAACACGGGGGAGTGAAAATTGCTCTATCCTTCTTCAATCCTTATAGCAATGAATTGAAGAAACTGCCTTCCCATAGAGAGGAGTATAGTTATGCTTCCTTCAATTATGCACAGAGTCTTGTCTCAGTTGGCAATGTTCATCATGAACAGTAA 1182 0.412 MVGNGNGNGNGNSKDGFLPDDVLINILKRVLVKSLIRFKCVSKDWLNLLQTPYFTEQHLHHSSHNSTFLLLQRIPHSFHRPSLTASECLIGPDFTVHHPQFIDFTSPDAMIVGSCNGLLCVRHSNYKLSLFNPATRQIRHIPETLIHVKSCYYVGFGFSPVVNDYKIVRISLSELNDEDGIVVLDNVRVNRAEVYSLRTGSWKEIDALVLQSLGLWSNSVTNNGAIFWQATMTESDHEFVISFDIAEEVFTLLEGPPTSPAICYSHVLAVHNDKLAMFRYAVIGNYESCSIDLWVLENNGTCAVAGESWIKMYSVRPLSGILYPLSIWRDLIVCWEESGGYGDEHGGVKIALSFFNPYSNELKKLPSHREEYSYASFNYAQSLVSVGNVHHEQ* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1232 393 PANTHER BNAA05G37150D PROTEIN-RELATED 15 313 - -
Apr1g1232 393 TIGRFAM F_box_assoc_1: F-box protein interaction domain 113 317 IPR017451 -
Apr1g1232 393 Gene3D - 16 56 - -
Apr1g1232 393 PANTHER BNAA05G37150D PROTEIN 15 313 - -
Apr1g1232 393 Pfam F-box associated domain 220 300 IPR013187 -
Apr1g1232 393 Pfam F-box domain 18 53 IPR001810 GO:0005515
Apr1g1232 393 SUPERFAMILY Galactose oxidase, central domain 125 315 IPR011043 -
Apr1g1232 393 SUPERFAMILY F-box domain 18 77 IPR036047 GO:0005515
Apr1g1232 393 SMART fbox_2 18 58 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1232 Apr-Chr1 21044915 21046313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1232 193 317 Carbohydrate Esterase AT1G25141 26.772 6.42e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1232 - - gmx:102669119 448.358