Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1231 ATGGAGAACAGCGCAGATGCAGATTACTGGAAGAAGCCAATGGCGAACTTTCTCATACGTTACCATTCCGACCAGCTGCGCTCCATCGCTTCTTCTCCTCATTCCAACCTTCACTTCCCTCTTTTCCTCGATTTCGCAGAGTTGATGGAGGATGATCCTCGTCTTGCCCGTCTCCTCTTTGCCCAACCCAGCACCTACTTGCAAATATTCGATGATGCTGCCCTTTGGGCTCATAAAATCATATTGGGAGATATGGCTGCTGACAAAAATGGGGTTGAGAAAAGTTTCATCCATGTTCGTATTAATATCAGTGGCTCACCCCTTGAATGCCCTGAGGCTTTTCCAAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATTCTTCTCTCTCTCAAAGGGATTGTAATCAGGTCTGGAGCAATCAAGATGCATGAAGGAGAGAGGAAGTACACGTGCCACAAATGTAAAAACAGCTTCACAGTTTATCCTGAGGTAGAAGCTCGAAACTTCATAAGTTTACCTCCAATATGCCCAATTCAGAAGTCCAATCCCTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGATCTTGTTGATATTGTTAAAGCTGGAGATGATGTGATTGTCACCGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCTGTACTAATTGCCAACAACGTAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTAATGACACTGTTATGAAATTCAAGAAGTTTTGGGTTCATTTCAAAGACGCACCTTTAAAAGGGAGGAATGCTATTCTGCGAGGAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTAGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAATCGATCTGTTATTACCACTGGGTTGGGAAGCACTAGTGCGGGATTGACTGTTACTGCAGTGAAGGATGCAGGTGAGTGGATGTTGGAAGCTGGGGCACTTGTTTTGGCTGATGGAGGATTGTGTTGCATTGATGAATTTGATAGTATGAGGGAACATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTCGTAACAACACTCAGCACTAGAACAACAGTATTTGGCGCCACAAATCCCAAGGGACATTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGATTTGATATTGTCCTTGTGCTCTTGGATACGAAAAATCCTGAATGGGATGCAGTAGTTTCATCACATATTCTTTCTGAGGCAGAACCGGATAGAACCAACAATGATGAAGATCTAGCAAATATCTGGCCTCTTCCTACACTCAAGAGGTATATACACTATGTGAAAGAAAATTTCAGACCTATCCTTACAAGGGAGGCTGAAATGGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACATATAATGCAGCTAGGACAACTGTTCGCATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCTAGGCTGATGTTCAGAAATGAGGTGATTCGACTAGATGCCATCACTGCAATTTTATGCATAGAATCCTCCATGACTACCTCGGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAAGAATATGCGAAACAAGAAAAATTGATCCTAGAAAAATTGGGATCAATAGATGACTTTTCTGATATGAATAGCGTGGAGGACTGA 1992 0.4277 MENSADADYWKKPMANFLIRYHSDQLRSIASSPHSNLHFPLFLDFAELMEDDPRLARLLFAQPSTYLQIFDDAALWAHKIILGDMAADKNGVEKSFIHVRINISGSPLECPEAFPSIGRVRVQHRGILLSLKGIVIRSGAIKMHEGERKYTCHKCKNSFTVYPEVEARNFISLPPICPIQKSNPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDIVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISNDTVMKFKKFWVHFKDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDAGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNNDEDLANIWPLPTLKRYIHYVKENFRPILTREAEMVISSYYQLQRKSATYNAARTTVRMLESLIRLAQAHARLMFRNEVIRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQEKLILEKLGSIDDFSDMNSVED* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1231 663 SUPERFAMILY Nucleic acid-binding proteins 38 255 IPR012340 -
Apr1g1231 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 346 361 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 404 418 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 432 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 490 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 Pfam MCM AAA-lid domain 531 612 IPR041562 -
Apr1g1231 663 CDD MCM9 308 612 - -
Apr1g1231 663 Gene3D - 144 200 - -
Apr1g1231 663 Pfam MCM OB domain 120 248 IPR033762 -
Apr1g1231 663 Gene3D - 120 248 IPR012340 -
Apr1g1231 663 PANTHER DNA HELICASE MCM9 32 651 - -
Apr1g1231 663 ProSiteProfiles MCM family domain profile. 305 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 651 IPR031327 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 SMART AAA_5 347 496 IPR003593 -
Apr1g1231 663 Pfam MCM P-loop domain 307 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 622 IPR027417 -
Apr1g1231 663 SMART mcm 113 614 IPR031327 GO:0003677|GO:0005524|GO:0032508
Apr1g1231 663 Gene3D - 280 618 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1231 Apr-Chr1 21034053 21044240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1231 1 637 Core DNA Replication Machinery Family AT2G14050 75.000 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1231 K10738 - gmx:100776255 1177.93