Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1229 ATGGAAAACGACGACGTCGACATGCAGCCAGCTGAGGCCAACGAAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCCGCTTTGAGAGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCCACTACTGCTTCTGCAAGTCAGGCAAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTTCAATCATGTGGAACAGTAAACAGAGTCACCATTCGGACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGGCCGAGGCTGTTCAGGAGGCCCTTTTACTGAATGAATCTGAACTTCATGGACGACAATTAAAGGTAACAGCTAAAAGGACTAACATACCAGGGATGAAGCAGTATCGTCCCCGCCGGTCCAATCCTTACATGGGGTTTCGAGGCAGAGCCCCATATGCACCTCCTTTTGTCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGCTACAGCCCCTACTATTGA 588 0.4711 MENDDVDMQPAEANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPTTASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEAEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGFRGRAPYAPPFVYSPYGYGKVPRFRMPMRYSPYY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1229 195 MobiDBLite consensus disorder prediction 48 64 - -
Apr1g1229 195 PANTHER - 4 192 - -
Apr1g1229 195 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 192 - -
Apr1g1229 195 MobiDBLite consensus disorder prediction 42 64 - -
Apr1g1229 195 Gene3D - 5 140 IPR012677 -
Apr1g1229 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Apr1g1229 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Apr1g1229 195 SMART rrm1_1 68 139 IPR000504 GO:0003723
Apr1g1229 195 CDD RRM_II_PABPs 68 139 - -
Apr1g1229 195 SUPERFAMILY RNA-binding domain, RBD 55 165 IPR035979 GO:0003676
Apr1g1229 195 Coils Coil 10 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1229 Apr-Chr1 21010411 21015165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1229 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 4.44e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1229 K14396 - gmx:100791351 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1987 3 35928054 35933265 Apr1g1229 1 21010411 21015165 PCT