Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1223 ATGGCGACAGTGGGCACCAACGTCAGCAAGGAACCGCCATTGAAGGTAGAGTCGCTTGCATGCATTGACTCAACGACTCTCTCACAATCAGAGCTCTATGCACTCTCTCTCTCCTCTTTCCACATTCGCTCCACCCATCATCTCGTCACTCCCAAAATCGACCCTACCCTCTTCAATGAGAGCGCCGGTTCCCGCCGTCAGACCTATTCTCGTCCCCAGTCCTCCCCCACCCTCCGCCGCCGCCGCCTCGCCGGACTTCTCCCCGCCCCCAAGCCCCCTCTCCTCCCCGCTCACGACCCTGAAAATGCCGAAAACCGCGTCATCATCGATTACCTTAAGCAACTCATCAGGGAGGACCCTAAGTTCGACCAAGTGGAGCTTTGCGTTCCTCAGCAGAGACCGGAACCTGACGCCGTGAGATTTGGCAACGGGGAGAGAAAGAGGAAGAGAGGGAGGAAGCCCAAGGTGAAGGTGCATTTGGAGGAGTGCTACAGAGGAATGGAGATCGTTAACAGGAACGGCGTTGCCATCGATCTCTCCGCCTTGGCTAACGCCGATAACCCCTTCGCGGAGGAGCTGAGGAGACGCACCGAAGGGTTGTGCAACGAAGAGGAGTTGTTAGGGTTTTTGAGGGATTTGCCGGGACAATGGGGAAGCCGGAGGAAGAAGAGGAGGATTGTCGATGCTGCTGATTTTGGTGATGTGTTGCCTCTTCGTTGGAAGCTTCTTCTCGGTTTGAAGAGAAAGGATGGTCGCGCTTGGATTTATTGCCGCAGATACATTAGCCCCAGTGGACAGCAATTCGTGTCTTGCAAAGAGGTTTCTTCGTATTTGCAGTCTCTTTTTGGTCACAGTGATGCACAGTTACAGATTAGTCGTAGGAGTGAAAATGTATCTCAGGAACAGAGAGTGAATGCTGAAAATTCTGCAGGTGTTGCCTATTATGAGGATCAAGATCAAAGGCAGATTGTTGCGACTAACTCTGACGTGCCTGGTTTGTCTGTTGCTAATGAACGGGTGAAGGAAGTGGCCTTGTTGGGGATTGAAAATCTCGCAGATGTGCAGATTCATGACCTATTTGAATGTCACAAGTGCAGCATGAGCTTTGATGAGAAGGATTCATACTTGCAGCACTTGTTGTCTTTTCACCAGAGAACAACAAGGCGGTATCGGCTTGGTTCATCTGTTGGAGATGGGGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCACAAGGTGTTTCTGGAAAGGCGCCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAGGGTTGAAGATTCCCCGGGTCAAGGAAATGTCCAGAGGGCAGACAAGTCTCCAGTTAGCGAGGATGTGCCTTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCATGGAACCCCACAGTTCAGCTAAACTGAATAAGATACCTGCTTCAGAAATTGCTGTCGGTGATTTGGATCATGACAGAGACTCTGAGTCTCCAATCAGTGAACGGAAAATGGAAGATAGCTTGACTGGAAAAAATGTGGTTCATAATTTGGATGGAGAAGTGGAGGAAATTGATGATGATGATGATGATCAAGTGATAGATGCAAAGATGGTTACTTTTCTAGATAACATGGGCTTGTTATCTGTAAATAAGAAAAATGTTAATTCAACTGAGACTTCTAAAGGGAAAGATGATGCAAAATCGGCAGTTGGGGGGTTTGATCAGTCTGGAATTGATTTGGATGGATTTTCTCAAAACCCTTTACTTCCTTTATCTAGAAATCACGTGATACTGGAATCTGAAGACAATAGTAATAGGAGTGAGTTAAAAATTGATTTAGATGGCTTGAAGGATGTACCTGTTAGCACTATTGTCCAAGAGATGGTAATACCAACTTCTGAAGAAAATGTGGATAATGTGAAGGGGTTCCAGCAATTGAGGTTGAATGAAATAGGTACGGTTGAGTATGATTTTGCAAAGGCTCAAGATTCTCCTATCCTGCCTGATGTACCAACTGAATTGACAAATAGCACAATGATGGAAGGGACGTATGCATCCCCAGTTCGGTTTGAACCACAAGAAGTTATGCTAAATATGGATCATGGCAGAAATCAACTTACCACTGTGTGTGTGTGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCCTGTAAGGAAAAAATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACCGAATCCTGGCCATCTTTAG 2322 0.4634 MATVGTNVSKEPPLKVESLACIDSTTLSQSELYALSLSSFHIRSTHHLVTPKIDPTLFNESAGSRRQTYSRPQSSPTLRRRRLAGLLPAPKPPLLPAHDPENAENRVIIDYLKQLIREDPKFDQVELCVPQQRPEPDAVRFGNGERKRKRGRKPKVKVHLEECYRGMEIVNRNGVAIDLSALANADNPFAEELRRRTEGLCNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGDVLPLRWKLLLGLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSLFGHSDAQLQISRRSENVSQEQRVNAENSAGVAYYEDQDQRQIVATNSDVPGLSVANERVKEVALLGIENLADVQIHDLFECHKCSMSFDEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQGNVQRADKSPVSEDVPLRISKMDALIEIAQNSIMEDSVMEPHSSAKLNKIPASEIAVGDLDHDRDSESPISERKMEDSLTGKNVVHNLDGEVEEIDDDDDDQVIDAKMVTFLDNMGLLSVNKKNVNSTETSKGKDDAKSAVGGFDQSGIDLDGFSQNPLLPLSRNHVILESEDNSNRSELKIDLDGLKDVPVSTIVQEMVIPTSEENVDNVKGFQQLRLNEIGTVEYDFAKAQDSPILPDVPTELTNSTMMEGTYASPVRFEPQEVMLNMDHGRNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKEKISGQINVLDSGSPNPGHL* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1223 773 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 14 620 IPR037472 -
Apr1g1223 773 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 643 762 IPR037472 -
Apr1g1223 773 ProSitePatterns Zinc finger C2H2 type domain signature. 409 429 IPR013087 -
Apr1g1223 773 ProSiteProfiles Zinc finger C2H2 type domain profile. 407 434 IPR013087 -
Apr1g1223 773 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 643 762 - -
Apr1g1223 773 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 14 620 - -
Apr1g1223 773 ProSitePatterns Zinc finger C2H2 type domain signature. 362 383 IPR013087 -
Apr1g1223 773 SUPERFAMILY DNA-binding domain 232 284 IPR016177 GO:0003677
Apr1g1223 773 MobiDBLite consensus disorder prediction 60 77 - -
Apr1g1223 773 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 226 298 IPR001739 GO:0003677
Apr1g1223 773 SMART c2h2final6 407 429 IPR013087 -
Apr1g1223 773 SMART c2h2final6 360 383 IPR013087 -
Apr1g1223 773 Gene3D Classic Zinc Finger 350 432 - -
Apr1g1223 773 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 388 IPR013087 -
Apr1g1223 773 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1223 Apr-Chr1 20932655 20936855 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g1223 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1223 - - gmx:100526917 1002.66