Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1215 ATGGCGGAGCATGCTTCTTACGGATTGGGTCCTCGATTAGACATTCAACAATTACAATTTGAAGCTCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCACATCACATCAGAACCTCATAACAGGCCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGCGAAAGAAAAGAGATGGGAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTACACTGCTACTATGCACATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCACATTGTATTTGTCCATTACTTGGATGTTAAGGGTAACAAGACAAATATTGGAGGAAATACTGATAGTGATGAGGTCACATCAGATTCGCATAAGGTCACCTCTCCATCATCTGGCTTTCACTCACCTTATAGCAGTGTGCCATCACTGAGTACAGATTCTGTGAGCCTGGCTACCAGTTTGACATCTTTACATGAAGATGCTGATTCTGGTGATCATGGACAATCATCAATTTCCGGAACAGATTATATACCAGTCTTGCAAAGCACTGTTGAATTGGGTAGTAACCCTACTCATGCATTGTTTCCTTCTATCCCATCTAGTTCAATGGGAAACATCCTTGAGCAAGAACATACTGTTTTTGATGACCTTTTAATGAGCAAAAATGGTCTTGCTAAGGAAGCTGAGAGCTCTCAGTCTCTCGAATCAAATTGGCAGATTCCTTTTGACGACAATTCAGGACACATGCCGACATTAGCCCAATCATTGAGTTTGGAATTTGGATCTGATTATGAATCTGGTTTACTTGGGAATGAAACTCATAATGCAAGGTCTGAAATTGCTCCGATCCTATATAGTTTTGATGGTGAGCTAAAAGAGCAGCCTATGCAGCAAAATTATCCAGAAGGGCATGCTGGTGAACAATCTCAACATGCACTAAAATCAAATTCTACAAATAAAGTTCATGGTGAAGAAACTATCAACTATACCTTAACTGTAAGGCGCTCATTATTGGACAGAGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTTCCAAAGAACTTGGAGAAGTGGCTGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATATGTGCATGCAATAGATGATAACTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTACCATAAATGATTTTTCTCCTAAATGGGCTTATTCTGAGTCTGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCGGAGGTGACAACTTGTAATTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTAAGATTTTAGATGATGGAATTTTGTGCTGTCAAGCTCCACCTCATAAGGTTGGACGCGTCCCTTTCTATGTAACGTGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAGGGCCTTGCCAGAAATGTAGATTTTTCAGATTTTTTTAATAGTTCAACTGAAATGCTGCTTCATTGGCGACTGGAAGAGTTTCTTTCTTTAAAGCCAGTGGATTCTTCAAATCAAACCTTTGAGGGTGATGTGGAAAAAAGAAACTTAATTTTTAAGCTTATTGCTCTGAGAGAGGAAGAATATTCAAACAGGGAAGAACCAACTGTAGAGATGGATATATCCCAATACAAGGTGAAGGAGCTTCTGTTTCACAGGCAGATTAAAGAGAAGCTGTATTCATGGCTTCTTCACAAAGTAACTGAGAATGGTAAAGGGCCAAACATATTAGATAAGGACGGGCAGGGTGTGCTACATTTAGCAGCTGTTCTTGGTTATGATTGGGCCTTAAATCCAATCATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTGTTCATTGGGCTGCATCCTTTGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCAGAATCTGGATTATTCACAGATCCATCTCCATCATTTCCTGGCGGTAGAACAGCTGCAGATCTTGCCTATAGCAATGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTCTTCATTAACTCACCATCTTGCAACACTCACAATGGATGATCAACATAAAGGTGGTAGGCAAGAAATTTCAGGAATGAAAGCAGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGCACTATGGTGATATGCCAGATGTCCTCTGCCTTAAGGATTCACTTACTGCTGTGCGTAACGCAACACAAGCTGCTGATCGTATTCATCAAGTATATAGAATGCAGTCATTTCAGCGGAAGCAGTTAACTCAGTATGAAGACGATGAGTTTGGCTTGTCAGATCAGCAAGCTCTTTCCCTTCTAGTTTCTAAGGCCTACAAATCTGGACAAGGAGATGGTTTAGCCAATGCAGCTGCTATACAAATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTTTTGATTACTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCATCAGGTAAGGAAACAGTATAAAACAATCATCTGGTCTGTGGGAATCTTGGAGAAGGTCATATTACGCTGGAGGCGCAAAGGTAGTGGTTTACGTGGATTTCGACCAGATGCCCTTAATAAAGTCCCCATTCAACAAAATGATTCTGTGAAAGAGGATGATTATGATTATCTCAAGGAAGGACGGAAACAAAAAGAGGAAAAAATCCAAAAGGCCCTATCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGCTACTAAATGTTGTTGAGGACTTCCGCCAAACCAAGGCATGTAATGTGGGTTTGATCAATTCTGAAGAGACAGTTGATGGGGTAGAGGACTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3051 0.4104 MAEHASYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKGNKTNIGGNTDSDEVTSDSHKVTSPSSGFHSPYSSVPSLSTDSVSLATSLTSLHEDADSGDHGQSSISGTDYIPVLQSTVELGSNPTHALFPSIPSSSMGNILEQEHTVFDDLLMSKNGLAKEAESSQSLESNWQIPFDDNSGHMPTLAQSLSLEFGSDYESGLLGNETHNARSEIAPILYSFDGELKEQPMQQNYPEGHAGEQSQHALKSNSTNKVHGEETINYTLTVRRSLLDRDESLKKVDSFSRWISKELGEVADLNMQSSPGISWSTDEYVHAIDDNSLSPSLSQDQLFTINDFSPKWAYSESEIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAKILDDGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDFREGLARNVDFSDFFNSSTEMLLHWRLEEFLSLKPVDSSNQTFEGDVEKRNLIFKLIALREEEYSNREEPTVEMDISQYKVKELLFHRQIKEKLYSWLLHKVTENGKGPNILDKDGQGVLHLAAVLGYDWALNPIISAGVNINFRDVNGWTAVHWAASFGRERTVAVLVSMGAESGLFTDPSPSFPGGRTAADLAYSNGHKGISGFLAESSLTHHLATLTMDDQHKGGRQEISGMKAVQTVSERTATPVHYGDMPDVLCLKDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQYEDDEFGLSDQQALSLLVSKAYKSGQGDGLANAAAIQIQKKFRGWKKRKEFLITRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPIQQNDSVKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACNVGLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1215 1016 SMART iq_5 839 861 IPR000048 GO:0005515
Apr1g1215 1016 SMART iq_5 862 884 IPR000048 GO:0005515
Apr1g1215 1016 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 221 1016 - -
Apr1g1215 1016 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 203 - -
Apr1g1215 1016 Gene3D - 597 789 IPR036770 -
Apr1g1215 1016 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Apr1g1215 1016 SUPERFAMILY Ankyrin repeat 615 725 IPR036770 -
Apr1g1215 1016 MobiDBLite consensus disorder prediction 333 353 - -
Apr1g1215 1016 ProSiteProfiles Ankyrin repeat profile. 664 696 IPR002110 GO:0005515
Apr1g1215 1016 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 203 - -
Apr1g1215 1016 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 221 1016 - -
Apr1g1215 1016 MobiDBLite consensus disorder prediction 144 173 - -
Apr1g1215 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 890 IPR027417 -
Apr1g1215 1016 ProSiteProfiles IQ motif profile. 863 887 IPR000048 GO:0005515
Apr1g1215 1016 Pfam IQ calmodulin-binding motif 842 860 IPR000048 GO:0005515
Apr1g1215 1016 Pfam IQ calmodulin-binding motif 865 884 IPR000048 GO:0005515
Apr1g1215 1016 Gene3D Immunoglobulins 425 520 IPR013783 -
Apr1g1215 1016 Gene3D - 840 887 - -
Apr1g1215 1016 ProSiteProfiles IQ motif profile. 840 869 IPR000048 GO:0005515
Apr1g1215 1016 SMART ANK_2a 631 660 IPR002110 GO:0005515
Apr1g1215 1016 SMART ANK_2a 664 693 IPR002110 GO:0005515
Apr1g1215 1016 SMART ANK_2a 703 732 IPR002110 GO:0005515
Apr1g1215 1016 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Apr1g1215 1016 ProSiteProfiles Ankyrin repeat profile. 631 663 IPR002110 GO:0005515
Apr1g1215 1016 SMART CG_1_2 18 136 IPR005559 GO:0003677
Apr1g1215 1016 SUPERFAMILY E set domains 431 517 IPR014756 -
Apr1g1215 1016 MobiDBLite consensus disorder prediction 329 353 - -
Apr1g1215 1016 ProSiteProfiles Ankyrin repeat region circular profile. 664 690 - -
Apr1g1215 1016 Pfam IPT/TIG domain 431 506 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1215 Apr-Chr1 20773959 20784545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1215 1 997 CAMTA Transcription Factor Family AT5G64220 53.151 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Apr1g1215 CG-1 2.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1215 K21596 - gmx:100818124 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1997 3 36016439 36031222 Apr1g1215 1 20773959 20784545 PCT