Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1203 ATGGCAGCTGCAACATCTGGTGCTGTTTTAAATGGATTGGGATCTTCATTCTTCTGTGGAGGGAAAAGGAGCCAAACCCTTCTGGCCACTGCCATTGGAGGCAAAGTTGGTGGTGCTGTTACCCCAAGAAGATTCATTGTTGCAGCTGCAGCTGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGGAATTTCGTTGACCCAGAATGGCTTGATGGATCGCTACCGGGTGACTATGGTTTTGACCCTCTAGGCCTTGGTAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTGATTCATGGAAGGTGGGCAATGGCTGCAGTTGTTGGCATATTTGTGGGGCAGGCATGGAGTGGAATTCCATGGTTTGAGGCTGGAGCTGATCCCAGTGCTATTGCTCCTTTCTCCTTTGGTACTCTTTTGGGAACACAGTTGCTTCTCATGGGGTGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAATCCAGACTCACAGTCAGTGGAGTGGGCCACTCCATGGTCAAGAACTGCTGAGAACTTTGCAAATGCCACAGGTGATCAAGGCTACCCAGGAGGCAAATTCTTTGACCCCTTGGGCTTGGCTGGAACCATCAAGGATGGGGTTTACATTCCTGATAGAGACAAGCTAGAAAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCTATGCTCATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTTGGCTTGTAA 777 0.4942 MAAATSGAVLNGLGSSFFCGGKRSQTLLATAIGGKVGGAVTPRRFIVAAAAAPKKSWLPGVRGGGNFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPSAIAPFSFGTLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGDQGYPGGKFFDPLGLAGTIKDGVYIPDRDKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1203 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Apr1g1203 258 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 258 - -
Apr1g1203 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Apr1g1203 258 SUPERFAMILY Chlorophyll a-b binding protein 68 258 - -
Apr1g1203 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 258 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1203 Apr-Chr1 20674400 20678614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1203 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 81.008 2.23e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1203 K08917 - gmx:100527463 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2017 3 36179744 36181906 Apr1g1203 1 20674400 20678614 PCT