Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1200 ATGGATGTTCTATCCTTAAGCTCAAACCTTAGCATTTCCAAGCCATTTAATTTCCTTCCACTAAAAAATAAACACCAAAATCCTTGTACACGGTTTACTGTTTCATGCGGCGCCACGAAACAGCTTCGGGGTGTGGACGAGACCACTAACTTGTACAAGATATTGTGTTTGAGTCCCAAAAGTGCAACCATGGATGACATAAAGAAAGCTTATAGATCAATGGCGCTTCGGTACCATCCTGATTTGTGCCTTGATGATTCCAAGAAAGAGGAGTCAACGAGGATGTTTGTGAAGCTGAATGCAGCTTACGAGACGTTGTCGAATCCAAGGCTTCGAGCTGAGTATGACCATGAATTGGGTTTGAGAAGCAATATTATGAGTGGTGTTGGTGATGAGAGTTGGAGGTGGCGGTGGCAGGAGCAAGTGGCTGAGTTGAAGAGAAGGTCTCATCGACGTACGGCACAAAAGGAGGAGGGGTCATGGGCCAATAGAATGAGGGCGCAAAACATGAGATGA 516 0.4535 MDVLSLSSNLSISKPFNFLPLKNKHQNPCTRFTVSCGATKQLRGVDETTNLYKILCLSPKSATMDDIKKAYRSMALRYHPDLCLDDSKKEESTRMFVKLNAAYETLSNPRLRAEYDHELGLRSNIMSGVGDESWRWRWQEQVAELKRRSHRRTAQKEEGSWANRMRAQNMR* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1200 171 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 3 171 - -
Apr1g1200 171 PRINTS DnaJ domain signature 53 71 IPR001623 -
Apr1g1200 171 PRINTS DnaJ domain signature 71 86 IPR001623 -
Apr1g1200 171 PRINTS DnaJ domain signature 91 111 IPR001623 -
Apr1g1200 171 Pfam DnaJ domain 50 116 IPR001623 -
Apr1g1200 171 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Apr1g1200 171 SUPERFAMILY Chaperone J-domain 8 115 IPR036869 -
Apr1g1200 171 MobiDBLite consensus disorder prediction 147 171 - -
Apr1g1200 171 ProSiteProfiles dnaJ domain profile. 50 119 IPR001623 -
Apr1g1200 171 SMART dnaj_3 49 111 IPR001623 -
Apr1g1200 171 Gene3D DnaJ domain 38 143 IPR036869 -
Apr1g1200 171 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 171 - -
Apr1g1200 171 CDD DnaJ 50 108 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1200 Apr-Chr1 20635503 20636018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1200 52 116 C2H2 Transcription Factor Family AT1G74250 40.299 1.07e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1200 - - vun:114187063 224.172