Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1194 ATGGAGCGAGTGACTTCATCTTTTATCGGTTCATATCTTGTTTGGGCAATTTTGGTACTTGATTTGGTGCTCAAGGCTTCCGGCAATGCAGAAGGTGATGCCCTGAATGCATTGAAGAGCAATTTGCTTGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCCTGCACGTGGTTTCATGTTACATGCAACAGTGATAACAGTGTGACTCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAATTGGTTCCACAGCTCGGTCAGCTCTCAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATCCCAGATGAGCTCGGAAACTTGACAAACTTGGTGAGCTTGGATCTTTATTTGAACACTTTAACTGGTCCCATACCGAGTACATTGGGCAACCTTGGAAAACTACGTTTCCTGCGTCTCAATAATAATAGCTTAACAGGAGGCATACCCTTCTCATTGACAACTGTTTCTTCGCTGCAAGTTCTTGATCTCTCAAACAACCACCTTAAAGGGGTCATCCCAGTGAATGGTTCATTTTCATTATTTACCCCCATCAGTTATCAAAATAATCCTGGCTTGATACCACCAAAAAATGTTCCGTCTCCACCAATTTCTCCAACACCACCAGCTTCTTCAGGTTTTAATACTGGGGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTTTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGAGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCGGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTGCGTGAACTGCAAGTTGCAACAGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCTCTCTTGTAGCAGTAAAAAGACTAAAGGAGGAACGCACACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATTAGCTTGGCTGTGCATCGAAATTTGCTTCGACTTCGTGGTTTTTGCATGACACCCACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTGGCATCATGTTTACGAGAACGTCATGAATCCCAACCTCCACTTGACTGGCCAATACGGAAGTGTATTGCTCTGGGAGCTGCTAGGGGGCTTGCTTATTTACATGATCACTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAACATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACTACTGCTGTACGTGGTACAATTGGACATATAGCACCAGAATACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGCGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAATTGGAAACACTGGTAGATGCAGATTTACAGGGCAATTATAGTGATGACGAGGTAGAACAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCCCCCGTGGAAAGACCAAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCGGAAAAATGGGAGCAATGGCAGAAAGATGAGATGTTCCGGCAAGATTTTAACAACAACATGCATCATCCAAATGCAAATTGGATAGTAGATTCAACTTCACATATCCAGCCAGATGAACTATCAGGTCCTAGATGA 1848 0.4269 MERVTSSFIGSYLVWAILVLDLVLKASGNAEGDALNALKSNLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVPQLGQLSNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNTLTGPIPSTLGNLGKLRFLRLNNNSLTGGIPFSLTTVSSLQVLDLSNNHLKGVIPVNGSFSLFTPISYQNNPGLIPPKNVPSPPISPTPPASSGFNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERHESQPPLDWPIRKCIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYSDDEVEQLIQVALLCTQGSPVERPKMSEVVRMLEGDGLAEKWEQWQKDEMFRQDFNNNMHHPNANWIVDSTSHIQPDELSGPR* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1194 615 ProSiteProfiles Leucine-rich repeat profile. 168 189 IPR001611 GO:0005515
Apr1g1194 615 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Apr1g1194 615 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Apr1g1194 615 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Apr1g1194 615 Pfam Protein kinase domain 292 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1194 615 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1194 615 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Apr1g1194 615 PANTHER BNAA08G11770D PROTEIN 11 615 IPR031048 GO:0004675|GO:0005102|GO:0006468
Apr1g1194 615 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 615 - -
Apr1g1194 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Apr1g1194 615 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Apr1g1194 615 SUPERFAMILY L domain-like 31 195 - -
Apr1g1194 615 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Apr1g1194 615 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Apr1g1194 615 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1194 Apr-Chr1 20570237 20588433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1194 13 615 Receptor kinase-like Gene Family AT4G33430 78.407 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Apr1g1194 Pkinase 5.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1194 K13416 - gmx:100800522 1110.9