Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1185 ATGGGAGATAACAATGTTAATCTTCCACCCGGGTTTCGCTTTTATCCCACAGATGAAGAACTTGTAGTTCATTTCCTTCACAGAAAGGCATCGCTTTTACCTTGCCACCCTGATGTCATCCCTGATCTTGAGGTCTACCCCTATGATCCATGGGAACTTGAAGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTATAGCAGAAGGATACAAAATAGGGTCACTGGCAATGGGTATTGGAAGCCAACGGGAATGGAAGAACCAGTGGTTTCTAGCACAAACAACAAGAGAGTTGGCATGAAGAAGTATTTTGTGTTCCATGTTGGAGAATCCCCTTCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTCTCAGATTCTGCTTCCTCCAGCAGATCATCCAAAAGAAAGCCACAACAAAAAATAGATCACAATAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGAGACGATGACAATGGAGCAGAACTGTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGACGAAATAAGCTTACCAAATTAG 567 0.4198 MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELEGRALAEGNQWYYYSRRIQNRVTGNGYWKPTGMEEPVVSSTNNKRVGMKKYFVFHVGESPSGIKTNWIMQEYRLSDSASSSRSSKRKPQQKIDHNKWVICRVYERNGDDDNGAELSCLDEVFLSLDDLDEISLPN* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1185 188 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Apr1g1185 188 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Apr1g1185 188 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 185 - -
Apr1g1185 188 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Apr1g1185 188 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Apr1g1185 188 PANTHER NAC TRANSCRIPTION FACTOR 56 5 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1185 Apr-Chr1 20385603 20386515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1185 1 173 NAC Transcription Factor Family AT1G61110 40.625 3.10e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g1185 NAM 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1185 - - gmx:100793989 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2027 3 36271570 36272431 Apr1g1185 1 20385603 20386515 PCT