Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1178 ATGGTTGGAAGTGTTGATGGTTTAGCTAAGGATTTGAGCAGCAATGGAGCAGTTGAACCATTGCCGGAGGATTTTGATGCAACAGCCATAATCAAAGATTCTGTGCCTTCTGCAATTGGCTGCAATGGAAAGGAGGAGGGTCAGACCAATAAGGGAAAAGAGAAAAGAGAAATAGTACTGGGAAGAAATATCCATACCATGTGTCTAGAAGTCACAGAGCCTGATGCAGATGATGACGTTACTGGGGACAGGGAGGCTTATATGGCAAGCGTGTTGGCCAAATACAAAAGAGCTTTGACTGAAAGGACAAAACATCATCTAGGTTATCCCTATAATTTGGATTTTGATTATGGTGCACTCTCACAACTTCAGCACTTTTCCATAAACAACCTGGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCAATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACCAACTGTGGTACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTATTCTGTTTTTAAAGCTGCTCGAATGTACAGAATGGAATGTGTGAAGGTTGACACTCTTTGGTCTGGGGAGATTGATTGTGACAATTTCAAGGCCAAGCTTCTTAGTCATCAGGACAAGCCAGCAATTGTAAATGTGAACATAGGTACCACTGTGAAAGGAGCTGTGGATGATCTTGATCTGGTCATAAAGACACTTGAAGAAGCTGGATTTTTGCATGACCGTTTCTACATCCATTGTGACGGGGCTTTGTTTGGTCTCATGATGCCTTTTGTGAAAAAAGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGCGTTTCTGGCCACAAATTTGTGGGGTGCCCCATGCCTTGTGGTGTACAGGTAACAAGATTGGAGTATGTTAATGCCCTTTCAAGGGATGTGGAATACCTTGCTTCTAGGGATGCCACAATCATGGGTAGTCGGAATGGCCATGCTCCCATATTTCTTTGGTATACCTTGAATCGGAAAGGATATAGAGGTTTTCAGAAAGAAGTACAGAAATGCTTGCGAAATGCACACTACTTCAAAGACCGCCTTGTTGAAGCTGGGATTGGTGCAATGCTTAATGAGCTGAGCAGCACGGTGGTGTTTGAGCGGCCACATGATGAGGAATTTATTCGCAAGTGGCAGTTGGCCTGCAAGGGGAATATCGCACATGTGGTGGTGATGCCAAACATCACCATTGAGAAGCTTGATGATTTTCTGAACGAGCTTATGGAGAAACGGGCTACGTGGTTTCAAGATGGCAAGTGTCAACCTTACTGTATAGCATCAGACGTAGGTGAAAAAAATTGCCTTTGTGCTCTGCATAAGTAA 1452 0.4373 MVGSVDGLAKDLSSNGAVEPLPEDFDATAIIKDSVPSAIGCNGKEEGQTNKGKEKREIVLGRNIHTMCLEVTEPDADDDVTGDREAYMASVLAKYKRALTERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFAQLWELEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLWSGEIDCDNFKAKLLSHQDKPAIVNVNIGTTVKGAVDDLDLVIKTLEEAGFLHDRFYIHCDGALFGLMMPFVKKAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQVTRLEYVNALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIEKLDDFLNELMEKRATWFQDGKCQPYCIASDVGEKNCLCALHK* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1178 483 Gene3D Aspartate Aminotransferase, domain 1 366 454 IPR015422 GO:0003824
Apr1g1178 483 PANTHER SERINE DECARBOXYLASE 1 483 - -
Apr1g1178 483 Pfam Pyridoxal-dependent decarboxylase conserved domain 193 404 IPR002129 GO:0016830|GO:0019752|GO:0030170
Apr1g1178 483 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 307 328 IPR021115 GO:0016831
Apr1g1178 483 PANTHER - 1 483 - -
Apr1g1178 483 SUPERFAMILY PLP-dependent transferases 103 453 IPR015424 -
Apr1g1178 483 Gene3D - 121 365 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1178 Apr-Chr1 20311760 20315425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1178 K25193 - gmx:100785163 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2035 3 36354956 36358238 Apr1g1178 1 20311760 20315425 PCT