Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1175 ATGGCTGATGCCGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGTATTATTGGGCGACCACGTCATACTGGTGTAATGGTTGGGATGGGCCAGAAGGATGCTTACGTGGGTGATGAAGCCCAGTCGAAAAGGGGTATACTCACCCTGAAGTATCCTATAGAGCATGGCATAGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCCCCTGAAGAACACCCTGTACTTCTTACTGAGGCTCCACTCAATCCCAAGGCCAACAGAGAGAAGATGACTCAAATTATGTTTGAGACTTTCAATGTTCCTGCAATGTACGTTGCAATTCAGGCTGTTTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGTTATGCCCTTCCTCATGCAATTCTTCGTTTGGACCTTGCTGGCCGTGATTTAACCGAGTACCTGGTCAAAATCCTCACTGAGAGAGGATACTCTTTCAGTACCTCTGCCGAGAAGGAAATTGTCCGTGATGTGAAGGAGAAATTGGCATATGTGGCCCTTGATTTTGAGCAAGAAATGGAGACTACTAAGAGTAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGACAGGTCATTACAATAGGGTCTGAGAGATTCCGTTGCCCAGAAGTTCTCTTCCAGCCTTCTCTAATTGGTATGGAAGCTACTGGAATTCATGAAACTACATACAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGACCTGTATGGAAACATTGTGCTTAGTGGTGGGTCTACTATGTTTCCTGGAATTGCTGACCGTATGAGCAAGGAAATTAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGGAAGTACAGTGTCTGGATAGGTGGTTCTATCTTGGCATCACTTAGCACCTTTCAACAGGTTTGTACTGATGCTTTTTTCTCAACTGTTCCGTTTTTTATCCTTAAGTGTCACATTCAATGGAATGGATTGGTTTATGGAATTCGTTGGGTGCTTTCTTTGTCTCTTCTATGCAGATGTGGATCTCTAAGGGTGAATATGACGAATCAGGGCCAGCTATTGTTCACCGAAAGTGCTTCTAAGTTGGGTCAAGTTGAGCTGGATGGTGATATAGTTCTTCATGCGCCCAGTCTTGTGCCATATTTCAGTCAAGTTTGGTTGACTTATTTGATGCTTTGGGTTTTTAATAGAGAAATATCTAGTTTAATGAATGGATTTGTAAGATGA 1395 0.4423 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVCTDAFFSTVPFFILKCHIQWNGLVYGIRWVLSLSLLCRCGSLRVNMTNQGQLLFTESASKLGQVELDGDIVLHAPSLVPYFSQVWLTYLMLWVFNREISSLMNGFVR* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1175 464 PANTHER - 1 362 - -
Apr1g1175 464 SMART actin_3 7 371 IPR004000 -
Apr1g1175 464 Pfam Actin 5 358 IPR004000 -
Apr1g1175 464 Gene3D - 10 359 - -
Apr1g1175 464 PANTHER ACTIN 1 362 IPR004000 -
Apr1g1175 464 Gene3D - 140 340 - -
Apr1g1175 464 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Apr1g1175 464 PRINTS Actin signature 28 37 IPR004000 -
Apr1g1175 464 PRINTS Actin signature 51 62 IPR004000 -
Apr1g1175 464 PRINTS Actin signature 63 85 IPR004000 -
Apr1g1175 464 PRINTS Actin signature 117 130 IPR004000 -
Apr1g1175 464 PRINTS Actin signature 142 161 IPR004000 -
Apr1g1175 464 PRINTS Actin signature 238 254 IPR004000 -
Apr1g1175 464 Gene3D Actin; Chain A, domain 4 182 273 - -
Apr1g1175 464 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Apr1g1175 464 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Apr1g1175 464 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Apr1g1175 464 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1175 Apr-Chr1 20274400 20277261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1175 1 357 Cytoskeleton Gene Families AT3G12110 94.398 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1175 K10355 - gmx:100778206 708.753