Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1170 ATGAGAGATATAAGGAATTTAGTGCATGGGTTGAAACCAGCTCTGATGATGTTGATGGTGCAGATTGCATTTGCTTCGGTAAATGTGCTCTACAAAGTTGCTATCAACGATGGAATGAGTGTGAGAGTGCTTACTGCTTACCGTCTCATTTTTGGAGCAGCTTGCACTGTTCCACTTGCTCTTATTTTTGAAAGGAAAAACAGACCAAAGCTGACTTGGAGAGTGATTTTTATGTCATTCTTTTGTGGCCTATTTGGGGGAAGTTTATTTCAAAACCTTTATTTCGAGTCCTTGGCATTGATTTCAGCAACATTTGCTTCAGCTGTTTATAATCTCATCCCTGCCGTCACTTTTATCTTAGCCGTCTCCTGCGGTTTCGAAAAATTAAATATGCGAACGTCGGCGGGCAAGGCTAAGGTGTTAGGAACCATAACAGGAATTGGCGGCGCAATGATGCTGACCTTTCTAAAGGGTATAGAAATTAACATCTGGACCTTCCACATTAACCTTTTGCATGAAAAGGGTCCCACTGGTGCACTAAATGGCGACTCTGGTAGTAAATTGTTGGGTGTATTTTGTGGCCTTGGAAGCTGCTTCTGTTTTGCATTATGGCTCATCATTCAGGCTAAGATGAGCAAAGAATACCCAAGTCAATACTCAAGCACAGCTTTGATGTCCTTAATGGGGGCAATTCAAAGCACTGTTTTTGCCCTTTGTGTTGAGAAGGATTGGAGCCAATGGCGACTGGGTTGGAACATTAGGCTTCTAACTGCAGCATATTCGGGAATTGTGGCCTCTGGAATAATGATTGTTGTAATTGCATGGTGTGTGAGGATGAGAGGCCCATTGTATGCGTCTGTTTTCAATCCTCTTATGCTTGTGCTTGTGGCCATTGCTGGCTCCTTGATGTTGGATGAGAACCTATACTTAGGAAGTGTAATTGGAGCAGTGCTAATTGTGATTGGATTGTACATGGTGTTGTGGGGTAAGAGCAAAGAAATAAAAAGGGTGACTCACTTAGAAATCACTCCAGAATTTCAAGAAATTGAGGTGGTTGTCGCGTCTAATGCGGTGGATCATGATAAAGGTAACTGCAACAACAACAACAGCCACACCAACAGTGGGAGCAATTCTGTTGACAAGGATGATGATAATTCATCGAAAAGTGAACACAAAGTACAAGACACCGAAAATAAAGGAAAAGAAGAAATGGGTTCAAGTGAAATCTCCAAGGCCTAA 1239 0.4213 MRDIRNLVHGLKPALMMLMVQIAFASVNVLYKVAINDGMSVRVLTAYRLIFGAACTVPLALIFERKNRPKLTWRVIFMSFFCGLFGGSLFQNLYFESLALISATFASAVYNLIPAVTFILAVSCGFEKLNMRTSAGKAKVLGTITGIGGAMMLTFLKGIEINIWTFHINLLHEKGPTGALNGDSGSKLLGVFCGLGSCFCFALWLIIQAKMSKEYPSQYSSTALMSLMGAIQSTVFALCVEKDWSQWRLGWNIRLLTAAYSGIVASGIMIVVIAWCVRMRGPLYASVFNPLMLVLVAIAGSLMLDENLYLGSVIGAVLIVIGLYMVLWGKSKEIKRVTHLEITPEFQEIEVVVASNAVDHDKGNCNNNNSHTNSGSNSVDKDDDNSSKSEHKVQDTENKGKEEMGSSEISKA* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1170 412 MobiDBLite consensus disorder prediction 360 412 - -
Apr1g1170 412 PANTHER WAT1-RELATED PROTEIN 12 348 - -
Apr1g1170 412 MobiDBLite consensus disorder prediction 377 412 - -
Apr1g1170 412 PANTHER WAT1-RELATED PROTEIN 12 348 IPR030184 GO:0016021|GO:0022857
Apr1g1170 412 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Apr1g1170 412 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Apr1g1170 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 332 - -
Apr1g1170 412 MobiDBLite consensus disorder prediction 360 376 - -
Apr1g1170 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1170 Apr-Chr1 20214719 20216919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1170 11 382 Nodulin-like Gene Family AT1G25270 40.483 6.13e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1170 - - gmx:100809587 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2038 3 36377508 36381715 Apr1g1170 1 20214719 20216919 PCT
Apr1g1170 1 20214719 20216919 Apr3g2039 3 36385759 36390381 PCT