Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1169 ATGAAGAGCATATGCAATGTTTTGCATGGGTTGAAACCAGTGATGCTGATGGTGGTAGTGCAAATTGCATATGCTGCTGTTAATGTGCTTTACAAGCTCGCCATAAACGATGGAATGAGTGTCAAGGTTGCTACAGCATACCGTCTCGCTTTCGGATCTGCTTTCACTGTTCCTCTTGCTCTCATTTCTGAGAGGAATAAGAGGCCAAAGCTGACATGGAGGGTGGTTTTCATGGCATTTCTTTGTGGTTTATTTGGGGGAAGTTTATTTCAGAACCTTTTCTACGAGTCCTTGGCTTTAACATCAGCAACGTTTGCGTCCGCTATCTACAACCTCATTCCAGCCATCACCTTTGTCTTGGCCATCTCCTGCGGTTTCGAAAGATTAAATTTGAGGGCAGCAGCAGGAAGGGCCAAGGTGTTGGGAACACTGATTGGAATTGGTGGGGCAATGTTGTTGACCTTTTTCAAAGGAGCAGAATTGGATATTTGGCCCTTCCATATAAACCTTTTGCATCCACATCACCACCAAAATACCCACGTTGCACCACTAAATGCTGACTCTGGCAGTAAATTGTTGGGTGTTCTCTGTGCCATAGCAAGTTGCTTCTCTTTTGCTTTGTGGCTCACTATTCAGGCTAAGATGAGCAAAGAATACCCATGCCATTATTCAAGCACTGCTCTAATGTCTACAATGGGAGCAATACAAGCCACTGTTTTTGGTGTCTGCGTGGAGAGGGATTGGAGCCAATGGAAGCTGGGTTGGAATATCAGGCTACTAGCTGTGGCTTATTCGGGAATCGTTGCCTCTGGATTAGTGGTTATTATCACTGCATGGTGCATACAGATGAGAGGGCCACTATTTGCGTCTGTTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATTTCCGGTTCTTTGATGTTGGATGAGAAATTATATATAGGAAGTTTGCTTGGAGCAGTGCTGATTGTGAGTGGGCTTTACATGGTTCTATGGGGTAAAAGTAAAGAGATGAAAAACATGACTCAGTTAGTGCCATCAGAAACGATCCAAGAAGCTGAAGCCATAGAAGTTGTTGTCATGTCCTCTCCAGAAGATCACGATAAATGTGACCACAACGAAACTAGTAGTACTTTGGAGAATGTTGACAAAGATAGTGGCGATTTGTCAAAAAATAAGGAAGAAGATGATACTCACATATAA 1203 0.4347 MKSICNVLHGLKPVMLMVVVQIAYAAVNVLYKLAINDGMSVKVATAYRLAFGSAFTVPLALISERNKRPKLTWRVVFMAFLCGLFGGSLFQNLFYESLALTSATFASAIYNLIPAITFVLAISCGFERLNLRAAAGRAKVLGTLIGIGGAMLLTFFKGAELDIWPFHINLLHPHHHQNTHVAPLNADSGSKLLGVLCAIASCFSFALWLTIQAKMSKEYPCHYSSTALMSTMGAIQATVFGVCVERDWSQWKLGWNIRLLAVAYSGIVASGLVVIITAWCIQMRGPLFASVFNPLMLVLVAISGSLMLDEKLYIGSLLGAVLIVSGLYMVLWGKSKEMKNMTQLVPSETIQEAEAIEVVVMSSPEDHDKCDHNETSSTLENVDKDSGDLSKNKEEDDTHI* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1169 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
Apr1g1169 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 336 - -
Apr1g1169 400 PANTHER WAT1-RELATED PROTEIN 12 368 IPR030184 GO:0016021|GO:0022857
Apr1g1169 400 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Apr1g1169 400 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Apr1g1169 400 PANTHER WAT1-RELATED PROTEIN 12 368 - -
Apr1g1169 400 MobiDBLite consensus disorder prediction 364 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1169 Apr-Chr1 20205492 20207488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1169 11 389 Nodulin-like Gene Family AT1G25270 40.106 5.54e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1169 - - gmx:100798755 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2039 3 36385759 36390381 Apr1g1169 1 20205492 20207488 PCT
Apr1g1169 1 20205492 20207488 Apr3g2040 3 36389957 36393608 PCT