Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1159 ATGGAGGCTGAGCCCAAGCGGTTGAAGCCACGGCTTGAGCGGCGAAACGCCATGAAAAACATCAATTATCAATTGAACGCGGAGGAAGAGAACGCCGACACAGCTTCTTTGCTACTTCAGAACCAAAGGAGCTTCCGCGTGAAAGGAATCGACGGGGAATTCGACCACATATTTCGCAGTCTGGGCCTCTCTGGGCCCGAAGACTTTGCCATCCCAGCTGCAGCATGGGAACAGGCCCAAAAGTCTCGCTCAGTATCTCCAATGGGTTTGGGCCTGGGCCAGGGTGGGATCAATGGTGTTCGGCCACCGCCGGTGATGCTGCGCACGCTCGTTGTTGATGAAACGCGAAGGGAGGATTTGGTTTCCGATGATGAGAGTGAAGTTGGTGTTGAAACTGATACTGAAAACACTGCTTCTTCTCTGGTTGAAGAGTCTATTCATGATCATAACGTTTCGCCAAACGGGTCTTTCGTGTCGTGGCAAAAGGGCGAGATCTTAGGAAAGGGATCATTTGGAACTGTCTATGAAGGTTTCACCGATGATGGGATCTTTTTTGCTGTAAAGGAGGTGTCTTTGCTGGATGATGGAAGCCAGGGCAAACAAAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCAGTTCCAACACGAGAACATAGTTCGATATCTTGGCACAGACAAGGATAATGATAAGCTATATATCTTCCTTGAGCTTGTAACAAAAGGATCATTGGCAAGTCTTTATCAAAAGTATCGCTTAAGGGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAGTGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCATAGGGACATCAAGTGCGCCAATATATTGGTTGATGCAAATGGGTCCGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACTAAATTGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCCGAGGTTGTTAACTTGAGAAATCGTGGCTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACTGTTTTGGAGATGTTGACACGACAACCTCCTTACTCTGATCTGGAAGGAATGCAAGCGTTATTTCGAATTGGCAGGGGACAGCCTCCACCTGTTCCAGAATCTTTGTCAAAAGATGCCCGAGATTTTATTCTTAAATGCTTACAAGTAAACCCAAACAAACGGCCTACTGCTACTCAGCTATTGGATCATCCATTTATAAAGAGAACACTTCTATCTCCCATAAGTCCTATTTCCCCAAGTGTTAATATTTTACTGTCTTAA 1302 0.4531 MEAEPKRLKPRLERRNAMKNINYQLNAEEENADTASLLLQNQRSFRVKGIDGEFDHIFRSLGLSGPEDFAIPAAAWEQAQKSRSVSPMGLGLGQGGINGVRPPPVMLRTLVVDETRREDLVSDDESEVGVETDTENTASSLVEESIHDHNVSPNGSFVSWQKGEILGKGSFGTVYEGFTDDGIFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSQFQHENIVRYLGTDKDNDKLYIFLELVTKGSLASLYQKYRLRDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGRGQPPPVPESLSKDARDFILKCLQVNPNKRPTATQLLDHPFIKRTLLSPISPISPSVNILLS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1159 433 Gene3D Transferase(Phosphotransferase) domain 1 159 424 - -
Apr1g1159 433 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 4 133 - -
Apr1g1159 433 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 133 416 - -
Apr1g1159 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Apr1g1159 433 Pfam Protein kinase domain 161 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1159 433 SUPERFAMILY Protein kinase-like (PK-like) 160 425 IPR011009 -
Apr1g1159 433 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 4 133 - -
Apr1g1159 433 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 133 416 - -
Apr1g1159 433 SMART serkin_6 160 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1159 433 ProSiteProfiles Protein kinase domain profile. 160 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1159 433 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1159 Apr-Chr1 20112613 20117476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1159 121 417 MAP Kinase Kinase Kinase AT4G08500 65.333 7.04e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr1g1159 Pkinase 3.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1159 - - gmx:100806902 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1159 1 20112613 20117476 Apr1g1159 1 20112613 20117476 ECH
Apr3g2054 3 36525667 36532841 Apr1g1159 1 20112613 20117476 PCT