Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1152 ATGGTTCAGGGAAGAGGCAGTAGTGCAACAATGCTACTATTCTGCGCATTGGTGCTTTGCTCTGTCATGGCTCATGCAACCACCTTTCAGGTTGGGGATGCAGCTGGTTGGACCTTTAACACCGTAAATTGGCCTGACGGAAAGACTTTCAAGCCTGGCGATACACTTGTGTTCTCTTATAGTCCTGCTGCGCACAACGTGGTGAAAGTGGATGAAGCTGGTTACAATTCATGCACTGCTTCAGAAGGATCAAAAACGTATCAATCAGGAAATGATACCATCAAGCTTTGCCCGGGAAAAAGCTTTTTCATCTGCACTTTTCCTGGTCACTGCCAAGGTGGGATGAAAATTGCAGTCAATGCTGCATGA 369 0.4661 MVQGRGSSATMLLFCALVLCSVMAHATTFQVGDAAGWTFNTVNWPDGKTFKPGDTLVFSYSPAAHNVVKVDEAGYNSCTASEGSKTYQSGNDTIKLCPGKSFFICTFPGHCQGGMKIAVNAA* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1152 122 ProSitePatterns Type-1 copper (blue) proteins signature. 99 115 IPR028871 -
Apr1g1152 122 PANTHER BLUE COPPER PROTEIN 8 120 IPR039391 GO:0009055
Apr1g1152 122 Gene3D - 25 122 IPR008972 -
Apr1g1152 122 ProSiteProfiles Phytocyanin domain profile. 27 122 IPR003245 GO:0009055
Apr1g1152 122 SUPERFAMILY Cupredoxins 28 121 IPR008972 -
Apr1g1152 122 PANTHER BASIC BLUE-LIKE PROTEIN 8 120 - -
Apr1g1152 122 CDD Plantacyanin 27 121 IPR041844 -
Apr1g1152 122 Pfam Plastocyanin-like domain 37 115 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1152 Apr-Chr1 19959004 19959475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1152 13 117 Miscellaneous Gene Families AT5G26330 40.909 2.29e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1152 - - gmx:100305948 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1152 1 19959004 19959475 Apr1g1152 1 19959004 19959475 ECH
Apr1g1152 1 19959004 19959475 Apr3g2312 3 38682065 38683389 PCT