Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1147 ATGTCTCTAACAAGCCGTCATCGTATTGTCATTGATGGGGTTCGAAGAACAAGAACTTATCACTATTTCTGGTGCCTATATTGCCGACGTACTGTGAGGATACCCTCTATAAACCCTGATGGTTCTTTTTGTCCCTATTGCTTCCATCGACTGCGTTATGAGCTTGATATATCAAGGCCAAGGCTTCTCATGAACGTGCCCAATAATTTGGAACCTTCTCCTGCTACTCAGTTAATGCACAACTTGGCTCTCCTTCTTGATCCATCTCCAAGGAGGCAAAACAACCATTTTAACACAACAACACAATGGGAAACGGAAACTGAAGATGGTCCAAATCCACAGGCTTGGATTACCCTACGATTTGCAAGGCCAACTCGTCCAACTAGGCCTATTTCCCCACCACAAAACTTGGTTCCACTTCCACAAGTCAACGGCACCTTTTTCGACAATATATTAGATGGGTTTAATGATGGGATTGTTCAGAACAATAGGCCAGGGCCACCTCCAGCTACATCTTCAGCCATTGCAGCGTTGCCAATGGTGAAATTGACACAAGCCGATTTGGCAAGTGACCCCAATTGCCCAATTTGCAAAGATGAGTTTCAGCTTGACATGGAAGTGAGAGAGTTGCCATGCAAGCATTACTACCATTCTGATTGCGTTGTCCCTTGGCTGCGCATGCACAACACTTGCCCAGTTTGCCGCTATGAGCTACAAGATATTGCTACTGCTAATAATTACCGCTTCCCAAATGAGAATAATTATGAGGAGAGCTTTGGGTTTGAGGATGTTACAAGCAGCTTGAACTGGATTTGGAGCCAAGTGGCTTCGTTCTGGCCTATCCGTAGAGTCCTAGATTGGACGCAGTCCTACTTTGATTCCCAAGAACATCATGTTCGTGATCGCAGAGGTAAAAGGTGCATGGCACCTCATTTGAAGACACGAATGAAATTGATAGAAGATCTCGAAGGCTCGTTCTGGTGTACGTGCCCACAAGTTATGAAAGAAACCTTACTTCTTGGTGAAGAACTACATTTCAAAATGATACCTTCACTTATGTCCTGA 1065 0.4451 MSLTSRHRIVIDGVRRTRTYHYFWCLYCRRTVRIPSINPDGSFCPYCFHRLRYELDISRPRLLMNVPNNLEPSPATQLMHNLALLLDPSPRRQNNHFNTTTQWETETEDGPNPQAWITLRFARPTRPTRPISPPQNLVPLPQVNGTFFDNILDGFNDGIVQNNRPGPPPATSSAIAALPMVKLTQADLASDPNCPICKDEFQLDMEVRELPCKHYYHSDCVVPWLRMHNTCPVCRYELQDIATANNYRFPNENNYEESFGFEDVTSSLNWIWSQVASFWPIRRVLDWTQSYFDSQEHHVRDRRGKRCMAPHLKTRMKLIEDLEGSFWCTCPQVMKETLLLGEELHFKMIPSLMS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1147 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Apr1g1147 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 302 - -
Apr1g1147 354 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 302 - -
Apr1g1147 354 SUPERFAMILY RING/U-box 175 241 - -
Apr1g1147 354 Pfam Ring finger domain 193 235 IPR001841 -
Apr1g1147 354 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Apr1g1147 354 CDD RING-H2_RNF126_like 194 235 - -
Apr1g1147 354 SMART ring_2 194 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1147 Apr-Chr1 19845331 19846755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1147 1 293 C3H Transcription Factor Family AT1G68180 30.769 1.72e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1147 K11982 - gmx:100793656 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1147 1 19845331 19846755 Apr1g1147 1 19845331 19846755 ECH