Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1134 ATGGGAAAAAGAAACGGTGGAAGGTCACTGCAAGAAACCCTTCGCCGTCGACTTGAATCCTGCAAGTCCAGGTACTCCACCGCCGATGAAATCGTGAATCATCTTCGCTCATCTTACCCCGATTACCAACGAACCAAGCACAAAACCCTAGTTCGATTTGTCCAGGAAGCTCTTCAATCCATCCCCAAGCCCAACCATTCTCCCACTCCCAAGCATCACCATGATGACGACGACGAAGGAGAGTGTCGAAGTGCGTCTCGAAAGAGACAGAAGAACTTTGATGAAAATGAAGAGAGATTACAAAAGATGGAAGCATTACACCTCCGAAGGAGAATGCAGAGCGATCCATCAACCTCCTCTGCTTCTGCTTCTGCTTCCTCTTCGGAGAGCGACGACGAAGGTGGGGCAGTGTCTGGGTCGACGTCTGAGGACGCAATTTATGAGGAGAAGGTGGAACCTGCATTTGATTTGATGAAGACAATGTTGCGAAATTCGTACACTCCGAAGAAGGTTGTGGCGGAGGAAAAGAACGTTGAATTGGAGGTGGGGAATGGTAGTAAGGGCACTACTACGCTTGTGGATGACGACAAGTCGGAAGGGAAGCAACAGAGGGATTCCAATTCGAATTCAAATTCGATTTTGAACGCCGAGGCAAAGGGGAAGGATGGACCGAGGTTTAGGGATTTGGGTGGAATGAAGGAGGTTGTGGAGGAACTGAAGATGGAGGTGATTGTGCCACTGTACCATCCTCAGTTGCCTAGACAGTTAGGTGTGAGGCCAATGGCTGGAATTCTGTTGCATGGACCACCTGGCTGTGGGAAGACTAAACTTGCTCATGCTATAGCCAATGAGACTAGTCTCCCTTTTTATCAGATTTCAGCTACTGAGGTGGTTTCCGGAGTCTCAGGTGCATCTGAAGAAAATATAAGGGAGCTTTTCTCTAAAGCATACAGGAGTGCTCCCTCCATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTGACACAGTTAATGACTTGCATGGATCAATCAAACAGGTTTTTGCAACCGGCTGCTGATGATTTGGAGAGTTCTGATGATTGTCGTCCTGGATATGTGCTTGTAATTGGGGCTACAAATAGGCCTGATGCTGTTGACCCTGCCCTGAGAAGACCTGGTCGGTTTGATCGTGAGATTATCATTGGCATTCCCGATGAATCTTCCCGGGAGGAGATTCTTTCTGTGCTTACTAGCAATCTTAGACTTGAGGGTTTATTTGATCTACGGAAAATAGCCAGGTCTACACCAGGATTTGTTGGTGCTGATTTGGCAGCTCTGGTTAACAAGGCTGGCAATCTGGCAATGAAGAGAATAATTGATGAAAGGAAACGTAAATTATCTCAAGATATCATGAGCAAGCATGCTGAAGACTGGTGGAAGGAACCTTGGTTGCCTGGAGAAATCAATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAAACGGTGCAACCTTCTTCAAGAAGAGAAGGATTCTCTTCCATTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTTTTAAGACAGGAGTTTGAACGCTATATTGTAAGGCGCATAAAATATCCTGAGCATTATGAGGGGCTTGGGGTGGATCTCGAGACAGGATTTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTAATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAACTTTATTCATATTAAGGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACATTGTTTAGTCGTGCAAGGACATGTGCACCTTGTATACTTTTTTTTGACGAGGTGGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGATGGGTTATTGAACGACTATTGAACCAGTTGCTTGTTGAGCTAGATGGTGCAGAGCAACGGCGGGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCTGGTAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAGCGAGTTTTAATATTGAAAGCTCTAGCAAGGAAGAAGCCTGTTGATGCCACTGTGGATTTGAGTGCCATCGGAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCTGATCTTGCCGCATTGATGAACGAAGCAGCAATGGCTGCTCTTGAAGAGAATTTAACCTCATTTGAGACAACTTGCAATACATCGACCATCAAGATAAATCATTTTGAGGTAGCACTGAGTAAAGTATCTCCGTCTGTGTCTGACATGCAAAAGCAGTACTATCAGCATTTGTCTGAGAGTTTTAAAGCCGCATGA 2406 0.4514 MGKRNGGRSLQETLRRRLESCKSRYSTADEIVNHLRSSYPDYQRTKHKTLVRFVQEALQSIPKPNHSPTPKHHHDDDDEGECRSASRKRQKNFDENEERLQKMEALHLRRRMQSDPSTSSASASASSSESDDEGGAVSGSTSEDAIYEEKVEPAFDLMKTMLRNSYTPKKVVAEEKNVELEVGNGSKGTTTLVDDDKSEGKQQRDSNSNSNSILNAEAKGKDGPRFRDLGGMKEVVEELKMEVIVPLYHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIANETSLPFYQISATEVVSGVSGASEENIRELFSKAYRSAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRFLQPAADDLESSDDCRPGYVLVIGATNRPDAVDPALRRPGRFDREIIIGIPDESSREEILSVLTSNLRLEGLFDLRKIARSTPGFVGADLAALVNKAGNLAMKRIIDERKRKLSQDIMSKHAEDWWKEPWLPGEINKLAIKMSDFEEAVKTVQPSSRREGFSSIPNVKWEDVGGLDLLRQEFERYIVRRIKYPEHYEGLGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCILFFDEVDALTTKRGKEGGWVIERLLNQLLVELDGAEQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERVLILKALARKKPVDATVDLSAIGKMEACENLSGADLAALMNEAAMAALEENLTSFETTCNTSTIKINHFEVALSKVSPSVSDMQKQYYQHLSESFKAA* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1134 801 ProSitePatterns AAA-protein family signature. 667 685 IPR003960 GO:0005524|GO:0016887
Apr1g1134 801 ProSitePatterns AAA-protein family signature. 380 398 IPR003960 GO:0005524|GO:0016887
Apr1g1134 801 Gene3D - 525 791 IPR027417 -
Apr1g1134 801 Gene3D - 411 519 - -
Apr1g1134 801 MobiDBLite consensus disorder prediction 68 111 - -
Apr1g1134 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 518 IPR027417 -
Apr1g1134 801 SMART AAA_5 563 699 IPR003593 -
Apr1g1134 801 SMART AAA_5 260 412 IPR003593 -
Apr1g1134 801 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 19 797 - -
Apr1g1134 801 CDD AAA 259 409 - -
Apr1g1134 801 CDD AAA 566 697 - -
Apr1g1134 801 MobiDBLite consensus disorder prediction 53 147 - -
Apr1g1134 801 MobiDBLite consensus disorder prediction 112 137 - -
Apr1g1134 801 Pfam AAA+ lid domain 720 757 IPR041569 -
Apr1g1134 801 Pfam AAA+ lid domain 433 468 IPR041569 -
Apr1g1134 801 Pfam ATPase family associated with various cellular activities (AAA) 264 408 IPR003959 GO:0005524|GO:0016887
Apr1g1134 801 Pfam ATPase family associated with various cellular activities (AAA) 568 696 IPR003959 GO:0005524|GO:0016887
Apr1g1134 801 Gene3D - 211 409 IPR027417 -
Apr1g1134 801 PANTHER AAA-FAMILY ATPASE 19 797 - -
Apr1g1134 801 MobiDBLite consensus disorder prediction 182 226 - -
Apr1g1134 801 Gene3D - 698 777 - -
Apr1g1134 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 797 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1134 Apr-Chr1 19659637 19664972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1134 496 799 Calmodulin-binding Proteins AT3G56690 43.791 4.53e-71 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1134 K14571 - gmx:100809594 1259.59