Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1133 ATGTTTGAGAATTCCATAATTGAGCTAGCATATCTTAGTGTTCAAAGTGTAAGTGGAGTGGATCAAGAGGGACTAAACAATATCAAGGAATCTATTGTAGCCTTTTTCGATATCAGTCCATCCATGTTAGAAACTACAATTGCCAATGGTTCACTGATGCAAAATGAAGACGAACCAAATGGAAGCGCGTCTAATGCTTCTAATACCGCTCAAACGAGTCCTCCAGTTTCTACAGGACCTAGAATAGAAATAGGGCTGCCGTTGATGTTCTTGTTCCGTGAGTTTCGCATGGCAGTGGCAGCGCTTGGATTCTTTGATTTGTCACTTGGTGGAGACTACAGGGCACGATTAACCCGCGCCAAAAATATTTTCAAGGAAGCCATTGCGGTATTGATGGAAAAGGGGTTTCAGAACTTCGACCGTACAAACCTTGCTGACGGACTGAAAACACTAGGAAACAACGCAATGCATAACGAATTGCATGACAAAGCTATTGAGATGTATACTTGTGTGCTAGCACTGTCTACTGATAATGCTCTCCACTTCCGTAACAGAGCAGCAGCTTTTACCAAGGTTGGGAGATATGCGGACGCGATTCGTGATTGCTATGAAGCAATAAAGCTAGAGCCAGGACATGTGCTAGCATACTATCGTCTTGGTTATGTCTATTATCAGCAAGGCAAGAACCTTGAGGCTATTCGTGAGGGCTTCCTTAAAGTTTTGGAGCTGGATCCACAAAATGAAGATGCTATGGTTGGTCTTCAGCTGGCCGATTCCAAGCTGAGAGATGAAGTAGCAAGTTTGAGAGAGCAGATTGAGAGGTTTGGCTTAAACGGAAACGGTGTTCCTCCCGTGACGGAGAGCCAGGCAGCTGTGAGGCAAATCCCAGTGTTGGTGTTTCGAGGACCGGAAGAAGGTGGGAATGGGCCATGGGAAATGGCTGAGGATGTGGGGGATACAAATGATGTTGATTTTGATGATGATGATGATGATGCTGATGTTGATATTGAAGATGGTAATGATGATGGTGATGGTGACGGTGATGGTGATGTTGATATTGCTGATGCTGACGGTGATGGTGATGTTGATATTGCTGATGCTGATGCCGATGCCGATGCTGATGCGGATGTTGTCGATGCGCATGTCCACAACATCCCTCCTCCTGAATGA 1170 0.4521 MFENSIIELAYLSVQSVSGVDQEGLNNIKESIVAFFDISPSMLETTIANGSLMQNEDEPNGSASNASNTAQTSPPVSTGPRIEIGLPLMFLFREFRMAVAALGFFDLSLGGDYRARLTRAKNIFKEAIAVLMEKGFQNFDRTNLADGLKTLGNNAMHNELHDKAIEMYTCVLALSTDNALHFRNRAAAFTKVGRYADAIRDCYEAIKLEPGHVLAYYRLGYVYYQQGKNLEAIREGFLKVLELDPQNEDAMVGLQLADSKLRDEVASLREQIERFGLNGNGVPPVTESQAAVRQIPVLVFRGPEEGGNGPWEMAEDVGDTNDVDFDDDDDDADVDIEDGNDDGDGDGDGDVDIADADGDGDVDIADADADADADADVVDAHVHNIPPPE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1133 389 PANTHER LD24721P 17 266 - -
Apr1g1133 389 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Apr1g1133 389 MobiDBLite consensus disorder prediction 52 78 - -
Apr1g1133 389 Gene3D Tetratricopeptide repeat domain 138 274 IPR011990 GO:0005515
Apr1g1133 389 SMART tpr_5 179 212 IPR019734 GO:0005515
Apr1g1133 389 SMART tpr_5 145 178 IPR019734 GO:0005515
Apr1g1133 389 SMART tpr_5 213 247 IPR019734 GO:0005515
Apr1g1133 389 MobiDBLite consensus disorder prediction 317 372 - -
Apr1g1133 389 MobiDBLite consensus disorder prediction 301 372 - -
Apr1g1133 389 Pfam Tetratricopeptide repeat 191 247 - -
Apr1g1133 389 SUPERFAMILY TPR-like 143 263 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1133 Apr-Chr1 19636533 19640037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1133 144 235 U-box Gene Family AT3G07370 32.609 1.11e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1133 K16365 - csin:114289602 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1133 1 19636533 19640037 Apr1g1133 1 19636533 19640037 ECH