Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1128 ATGAAGATTGTTGTGTTCTTTGCAGTGTTTCTTCTTCTTCTATTCATGAGCTCAGCAGCTCCATCTCCTCCCTCCTCTACATCATCAGCAGCATGCCCTATGGACTTGAATTACGTGCTTAGAATCCCATGGAACTCTTCTGCTTGCCAAAGCTTCCACCCTTCGACATCAAAAAATGTAACAAATCCAAGCACTTGTTGCATATCACTGTTGTCCCTCTTTGGCATAGGATTGGCACAGCACCTCAAAGAGACCTCTCAGTTCCAACTTCCCAACCTTGCCACCTCCATTTCATGCCTTGAAGACTTCCAATCAAAGCTCACTTCTCTCTCACTCTCCAACAACCTCGTCAATTCTTGCTTTGACCCTCTTCAGTTCGTCATCTCTCCCAACATCTGTGCTGGAATTCAGACCATCCCTGATTGGATCACCAAGCTTGGTCAATCCACGTCACTCAACACTGCGTGTAAACCAGATCTTACTGATCTTTCCCTCTGTGATCAGTGTCTTGCGGCTGGGTTACAGGTCAAGCAGAAGCTTATTTCCATTGATGGTAATGCTTCACATTCCATAGATTGTTTTTACTTCGCCATTCTATATGCTGCTGGAATAGTCAATAAGTTTGGGCCTGAAAGCAATGGTGCTGTGACTTGCATTTTTAGCATGTCAGTTTATTCACAAGGAGAGTCTGGGGGAAAGGGTCATCAGGCTCTTGTGTTTGGGTTGACAGGAGCTGGAGTTGCATTGTTGGTGATGTCTTCTTTGTTGGGGTTGTATGTGTGGTATGACAGGAAGTGTCGGAGGAAAAAGCTTGAGACTTTTCAGTTCGATTTTGACCCTGAGGAACAAGGGTCTAGGCCTAGATTGAGACCCAATACGGGCTCCATTTGGTTCAAAATTGAGGAACTTGAGAAGGCTACGGATAATTTTTCATCCAAGAACTTCATAGGGCGGGGGGGATTTGGGATGGTTTTCAAGGGAACCTTGTCTGATGGAACTGTGGTTGCGGTTAAAAGGATTCTGGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTGGAGATTATTAGCAATCTAAAGCACCGTAATCTTGTGCCTCTTAGAGGCTGTTGTGTGGCTGAAGAGGATGAGGATTATGCTGACAGGGGAAGCCAAAGGTATCTTGTATATGATTACATGCCTAATGGGAACCTGGAAGACCATCTCTTTGCATCAACGGACACTCCGAAATTAGCAAAGAGATCATTGACTTGGCCTCAGAGAAAGAGCATAATCTTGGATGTGGCAAAGGGGTTGGCTTATTTGCACTATGGAGTTAAACCTGCAATCTATCACAGGGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCAAGAGTTGCGGATTTTGGGCTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGAGTGGCTGGAACACATGGTTATCTAGCCCCGGAATATGCACTCTATGGTCAACTCACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTAGATTTGTCTTCATCAGGATCACCCCGGGCATTCTTGATCACGGATTGGGCTTGGTCATTGGTGAAAGCTGGCAAGATAGAAGAGGCTTTGGATGCTTCCCTGTTGAAAGATGAGAATTTTCCTAGTTCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTGGTGGGAATCCTGTGCTCTCATGTAATGGTTGCTTTGAGGCCAACTATTGCTGATGCTTTGAAGATGTTGGAAGGTGATATTGAAGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGCCATCCTTCATTTTACAATGATAGCAACACTTTTAGCATATCTCCAGCATTAAGCGGCCCCAAATTGCACTCTGGAGACATGCTCAGGTAA 1947 0.4463 MKIVVFFAVFLLLLFMSSAAPSPPSSTSSAACPMDLNYVLRIPWNSSACQSFHPSTSKNVTNPSTCCISLLSLFGIGLAQHLKETSQFQLPNLATSISCLEDFQSKLTSLSLSNNLVNSCFDPLQFVISPNICAGIQTIPDWITKLGQSTSLNTACKPDLTDLSLCDQCLAAGLQVKQKLISIDGNASHSIDCFYFAILYAAGIVNKFGPESNGAVTCIFSMSVYSQGESGGKGHQALVFGLTGAGVALLVMSSLLGLYVWYDRKCRRKKLETFQFDFDPEEQGSRPRLRPNTGSIWFKIEELEKATDNFSSKNFIGRGGFGMVFKGTLSDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEEDEDYADRGSQRYLVYDYMPNGNLEDHLFASTDTPKLAKRSLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKIEEALDASLLKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNDSNTFSISPALSGPKLHSGDMLR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1128 648 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 25 646 - -
Apr1g1128 648 SMART serkin_6 310 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1128 648 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Apr1g1128 648 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 646 - -
Apr1g1128 648 Gene3D Transferase(Phosphotransferase) domain 1 395 610 - -
Apr1g1128 648 CDD STKc_IRAK 316 604 - -
Apr1g1128 648 Pfam Protein kinase domain 312 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1128 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Apr1g1128 648 Pfam SPARK 27 194 IPR043891 -
Apr1g1128 648 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Apr1g1128 648 ProSiteProfiles Protein kinase domain profile. 310 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1128 648 Gene3D Phosphorylase Kinase; domain 1 281 394 - -
Apr1g1128 648 SUPERFAMILY Protein kinase-like (PK-like) 289 603 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1128 Apr-Chr1 19515107 19518160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1128 25 648 Receptor kinase-like Gene Family AT1G11050 66.720 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Apr1g1128 Pkinase 5.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1128 - - gmx:100806560 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1128 1 19515107 19518160 Apr1g1128 1 19515107 19518160 ECH
Apr1g1128 1 19515107 19518160 Apr3g2301 3 38603142 38605028 PCT