Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1122 ATGTGTTGCTTGATTACTGCTACAATGAGGGAAAGTCAAGCCAAATCAACAAAGGGTCTTAAATGTGATGATAAAACTCCACAGGTCAATTGGTTACTTCACTCCAATGCTCACGAGAATTTCTCGTGTCAAGCCAAGTTTTTGCGCTCCAATTTTCTCTTCTCTATCCCATCTAAGAAGCCTCGCAATGAAGAACCAACTGCTCCAACTGGCAGGTTTGTTGCTCAACAAGGTCAAAATTCTCAGAGAGTACAATTTGAGAAGGCTTGGCATGCTCTTTCAAGTCTACAGAATTCTGGTAGGAACTATGTTCAACCTGGGAAAACTATCAAGGTTACTCCTCAGTGTTGTGAAGACAGGAGAACAAATTCCTTCCAAGGAAGTTATGAGAATGATAAGCTCAGGGAATCTGATGTCACCACAACTCCAATTGTTATCAATCACAGTTCTCGTGTTTCGGCTGGTTCAGTTAACAATCATAGCAAGTACACAGGCCAAATCAATGAGTCTACAAAATGTATGGCTGTTGATATTGATGATGATGACATACTTGAGAACATTGATGTTGACCAAATTGTGGAGAAATATCAGTCAACATGCACTCCCCAACCACCAATATCCAAGCTTCCACCTCTAACACCAACTGTAGATAAAGACAATTTTGATAGACAGGGAAATAATGTTTTGCCACCAGAGCTCTTTGTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATGATCTGATTGCTATATCTAATGAACTGCTTGACAATGGTGACAACCTCAGTTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTGAATAACCAAATTCGGCATCTTGAAAAATATCTTCAGTCCAGTAATCTTAATGAGGAAAGGCAGAAGTCTCATTTTTCTGCTTCCACAGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCTCTGTGATGGACCAAAGAGATATGATGCTCAGGCTTGTATGGGTAATGGGACACCTGGGTCATTGTTTCAGTCCCTTCCATCCTTTTCTGTAGATAAGTATAGCATGTCAACAGGTCCAGTGGAGAGAGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGCTCTGGAGATAAACGATGGAGCAGACAGGATTTTGCTTGGACAAAAAAGTTAGAGGTTAATAATAAAAAGGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGCTACCAGCCCTTATTTGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACTTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGACAGAGCAGCAGGAGATTCTCCGAGAACTTAATTCTGACTACTGTAAATACAAGTTGTTATATGTAACACCTGAGAAGGTTGCCAAAAGTGATGTTCTTCTGCGACACTTGGAGAGTTTACATGTTCGTGAGTTACTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGACATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCCACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGGCCAAACTTATGGTATTCTGTTATCCCAAAGACCAGAAAGTGTTTGGAAGACATTGACAAATTTATTAGGGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGTATGGATCCTGCTCAACGTACCTTTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACAGTGGCATTTGGAATGGGTATTAACAAACCAGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGACGGTCAACGTTCATCCTGTGTATTATATTATAACTATAGTGATTATATACGAGTTAAGCATATGTTAAGTCAAGGAGCAATAGAGCAAAGTTCCATCACATCTGGATATAACCGTTCAAATATGACAAATTCAGGAAGGATACTGGAAACAAACACTGTAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACTGAGATTGCTAAGCAATTGGTTGAACTTGTTAAGCTAACGGGACAGGTGGTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTGAGCCAGATGGTCAAGAGACACCGGCATGAGATTCTGAGCCTTCATGGTGCTGGGAAGCATCTAGCTAAAGGTGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAGGATTTTCTTGTGGAGGAGGTAAAGAAAAGTGATATTTATGGATCGGTATCATCAATATTGAAGGTAAACAATCCCAAGGTCCATAATCTGTTTGCCGGGCAGAGAATTATATTGAGATTCCCATCCTCTGCAAAGGCAACAAAGCCAGGGAAATCTGATGTAACTCCAGCTAAAGGTTCTCTGACATCTGGGAAGCTTAATCTTCCAGTAATTGACATTCCTGCCCAGCCTCAAACTGAAGTGGATTTGAATCTTTCAGCTAAGTTATACACTGCTCTGCGGATGTTGCGGACAACTCTTGTTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGTAATGCTACATTGCAGCAGATCAGTAAGAGAGTGCCAAGAACAAAGGAAGAACTCCTTGATATCAATGGCATTAGCAAGACTAAGGTAAGCAAGTACGGGGATCGGTTACTTGAAACCATTGAAAATACCATAAATGAATATTACAAGTCGGACAAAAACAGCAGCAGCAGCAGCAAAGGCAGTGCTGATTCTACCAAAAGGAGGCGAGAGACAAATGGAGTCCCAGATGAAAATGCTGATGATCGTGATGCCTTCACCACAAGTACAGGTCGTTCAAAGAAAAGGACCGTAAAGAGACAAAATAGAAAAGCTGAGATATATGATTCTGCGGAAGAAGATTATTTGCATGGATGCCTTGATGAAGACTTAGATTTGGACGTCAGAGAAATTGGTGCATTAGATAAAACAACTTGTAAAAATGAAGCAGGAAGAGTGCTACCACAATGGACAGCATCTTGA 3519 0.4041 MCCLITATMRESQAKSTKGLKCDDKTPQVNWLLHSNAHENFSCQAKFLRSNFLFSIPSKKPRNEEPTAPTGRFVAQQGQNSQRVQFEKAWHALSSLQNSGRNYVQPGKTIKVTPQCCEDRRTNSFQGSYENDKLRESDVTTTPIVINHSSRVSAGSVNNHSKYTGQINESTKCMAVDIDDDDILENIDVDQIVEKYQSTCTPQPPISKLPPLTPTVDKDNFDRQGNNVLPPELFVDCIHGYKLGLCPEAASHLQELKDDLIAISNELLDNGDNLSSTQIAKLRHDRSQLNNQIRHLEKYLQSSNLNEERQKSHFSASTAPPTSFVYETPQQTVLCDGPKRYDAQACMGNGTPGSLFQSLPSFSVDKYSMSTGPVEREAFIPKIIEVNYIEGSGDKRWSRQDFAWTKKLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRHLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTRKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRTFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMLSQGAIEQSSITSGYNRSNMTNSGRILETNTVNLLRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQVVSSSHILEVYRGSLSQMVKRHRHEILSLHGAGKHLAKGEASRVLHHLVVEDFLVEEVKKSDIYGSVSSILKVNNPKVHNLFAGQRIILRFPSSAKATKPGKSDVTPAKGSLTSGKLNLPVIDIPAQPQTEVDLNLSAKLYTALRMLRTTLVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIENTINEYYKSDKNSSSSSKGSADSTKRRRETNGVPDENADDRDAFTTSTGRSKKRTVKRQNRKAEIYDSAEEDYLHGCLDEDLDLDVREIGALDKTTCKNEAGRVLPQWTAS* 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1122 1172 Pfam HRDC domain 992 1060 IPR002121 GO:0003676
Apr1g1122 1172 Pfam DEAD/DEAH box helicase 423 591 IPR011545 GO:0003676|GO:0005524
Apr1g1122 1172 CDD SF2_C_RecQ 612 744 - -
Apr1g1122 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 753 IPR027417 -
Apr1g1122 1172 SMART RQC_2 837 947 IPR018982 GO:0006260|GO:0006281|GO:0043138
Apr1g1122 1172 Coils Coil 279 299 - -
Apr1g1122 1172 SUPERFAMILY HRDC-like 991 1064 IPR010997 GO:0000166|GO:0044237
Apr1g1122 1172 Pfam RecQ zinc-binding 746 828 IPR032284 -
Apr1g1122 1172 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 543 552 IPR002464 -
Apr1g1122 1172 SMART helicmild6 654 735 IPR001650 -
Apr1g1122 1172 MobiDBLite consensus disorder prediction 1082 1109 - -
Apr1g1122 1172 Gene3D - 385 611 IPR027417 -
Apr1g1122 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 629 778 IPR001650 -
Apr1g1122 1172 SMART hrdc7 988 1070 IPR002121 GO:0003676
Apr1g1122 1172 Gene3D HRDC domain 987 1076 IPR044876 -
Apr1g1122 1172 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 413 888 IPR004589 GO:0004386|GO:0006310
Apr1g1122 1172 MobiDBLite consensus disorder prediction 1069 1122 - -
Apr1g1122 1172 Gene3D - 835 944 IPR036388 -
Apr1g1122 1172 PANTHER DNA HELICASE RECQ FAMILY MEMBER 110 1141 - -
Apr1g1122 1172 SMART ultradead3 417 620 IPR014001 -
Apr1g1122 1172 CDD DEXHc_RecQ 412 611 - -
Apr1g1122 1172 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 110 1141 - -
Apr1g1122 1172 ProSiteProfiles HRDC domain profile. 988 1070 IPR002121 GO:0003676
Apr1g1122 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 604 IPR014001 -
Apr1g1122 1172 Gene3D - 612 831 IPR027417 -
Apr1g1122 1172 Pfam RQC domain 834 949 IPR018982 GO:0006260|GO:0006281|GO:0043138
Apr1g1122 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 878 IPR027417 -
Apr1g1122 1172 Pfam Helicase conserved C-terminal domain 628 734 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1122 Apr-Chr1 19408496 19416480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1122 643 758 Eukaryotic Initiation Factors Gene Family AT3G19760 24.138 5.50e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1122 K10901 - gmx:100800006 1854.72