Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1112 ATGGCTGTACATACAAAATTCCACCTTATTGCTTATTCAGAAGAGCTCGTAGATGGGCAGCCTATTTTTGTTTCTTCAAACTGTCTTCCTATCAAGGCTTCGAACTTTGAACCTGCAGGTCATGCCTTCCATTCTGTTGCACTTAAACTTCTTGGTGTTCAGGAAGATAGCAGAGATGCTGATAGTAAAAAAGTGGTTGATGATAAGGAACAGGCTTATTTCCCATCTGATTCTTATAGTAGCAAGGGCAAAAAGAAATCTGGTGCTGGTGACAAGCAGCAAGATCACTATGCATTGTTGGGCTTGAGCCATCTAAGGTATCTTGCTACAGAGGATCAAATACGTAAAAGCTACCGTGAAACTGCTTTGAGGTTTCATCCGGATAAACAAGCTGCTTTGCTTCTTGCTGAGGAAAGTGAAGCTGCAAAGCAAGAAAAAAAGGATGAAATAGAAAGTCACTTTAAGGCAATCCAGGAAGCATATGAAGTGTTGATTGATCCTCTGAAGAGAAGAATTTATGATTCCACAGATGAGTTTGATGATGAGATTCCCACTGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCTGCTTTTATGAGGAACGGGCGGTGGTCAGTTAACCAACCAATTCCAACACTAGGTGATGATAATACTCCATTAAAAGAAGTTGATAATTTCTACAATTTCTGGTACTCTTTCAAAAGCTGGAGGGAGTTTCCGCATACTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGAGATCACAAAAGGTGGATGGAAAGACAGAATGCAAAACTGAGTGAAAAAGCTAGGAAGGAAGAGTATGCCCGGATACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAGCAAAGGAAAAAGGAGGCTAAGATTATGGCAAAGAGGTTGCAGGAAGAAGAAGCAGCTAGAATTGCAGAAGAGGAGAGACGAAGAAAAGAGGAGGAAGAGAGACAAGCCGCAGAAGCTGCTTTACAACACAAGAGGGTGAAAGAGAAAGAGAAAAAGCTTCTGCGGAAGGAGCGAACACGTCTTCGAACTCTTTCGGGACCTATTTTATCACAGCATTTATTTGATATTTCCAATGATGATGTAGAAAAGCTTTGCATGACACTTGATATTGAGCAACTGAGGAGTCTGTGTGAGAACATGGAAGGCAGGCAAGTGTTATTAGAGCAAGCAAAAGTTCTAAGAGATGCACTGAGTTGTAAGAAAGAAGTGGTTGATGAGAAATCCGATCAACAGAATGTCAATGGTTCCATAAAGGCTAATGGCAGTACTTCACTAACCAACACTGAGAAGAAGGAGAAACCTTGGAATAAAGAAGAGATTGATCTATTGAGGAAGGGAATGCAAAAGTATCCCAAAGGAACATCACGGCGATGGGAGGTAATTTCAGAATACATCGGTACCGGAAGATCTGTTGAAGAAATTATGAAGGCAACTAAAACTGTTCTCCTCCAAAAACCTGATTCATCAAAAGCCTTTGATGCATTTCTTGAGAAAAGGAAACCAGGTGCACAATCAATTGCATCACCGCTGACAACCAGGGAAGAATTGGAAGGGACATCATCAACAACCAATAATGTAGAAGACTCTGATAGCAAAAGTGCAGAAAATCAGAACAACACTACCTCTGCTAATGGAGTTTCATCGAATTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGGGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAGACAAGCCAGAGATGGGAGCGGGTTGCAGCAGCTGTGCCTGGAAAGACTGTAAATCAATGCAAGAAAAAATTTGCAATGATGAAGGAGAATTTTAGGAACAAAAAAACTGCAGTTTAA 1911 0.4118 MAVHTKFHLIAYSEELVDGQPIFVSSNCLPIKASNFEPAGHAFHSVALKLLGVQEDSRDADSKKVVDDKEQAYFPSDSYSSKGKKKSGAGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEESEAAKQEKKDEIESHFKAIQEAYEVLIDPLKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPTLGDDNTPLKEVDNFYNFWYSFKSWREFPHTDEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKIMAKRLQEEEAARIAEEERRRKEEEERQAAEAALQHKRVKEKEKKLLRKERTRLRTLSGPILSQHLFDISNDDVEKLCMTLDIEQLRSLCENMEGRQVLLEQAKVLRDALSCKKEVVDEKSDQQNVNGSIKANGSTSLTNTEKKEKPWNKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDAFLEKRKPGAQSIASPLTTREELEGTSSTTNNVEDSDSKSAENQNNTTSANGVSSNSEQDVWSAVQERALVQALKAFPKETSQRWERVAAAVPGKTVNQCKKKFAMMKENFRNKKTAV* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1112 636 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 633 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Apr1g1112 636 MobiDBLite consensus disorder prediction 330 349 - -
Apr1g1112 636 CDD SANT 580 626 IPR001005 -
Apr1g1112 636 SMART sant 576 628 IPR001005 -
Apr1g1112 636 SMART sant 456 509 IPR001005 -
Apr1g1112 636 MobiDBLite consensus disorder prediction 526 577 - -
Apr1g1112 636 Pfam DnaJ domain 95 174 IPR001623 -
Apr1g1112 636 SUPERFAMILY Homeodomain-like 578 632 IPR009057 -
Apr1g1112 636 CDD SANT 459 501 IPR001005 -
Apr1g1112 636 SUPERFAMILY Homeodomain-like 454 501 IPR009057 -
Apr1g1112 636 PRINTS DnaJ domain signature 48 66 IPR001623 -
Apr1g1112 636 PRINTS DnaJ domain signature 118 133 IPR001623 -
Apr1g1112 636 PRINTS DnaJ domain signature 149 169 IPR001623 -
Apr1g1112 636 Gene3D DnaJ domain 78 187 IPR036869 -
Apr1g1112 636 Coils Coil 295 354 - -
Apr1g1112 636 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Apr1g1112 636 MobiDBLite consensus disorder prediction 435 459 - -
Apr1g1112 636 Coils Coil 395 415 - -
Apr1g1112 636 Pfam Myb-like DNA-binding domain 579 624 IPR001005 -
Apr1g1112 636 MobiDBLite consensus disorder prediction 435 454 - -
Apr1g1112 636 ProSiteProfiles SANT domain profile. 575 630 IPR017884 -
Apr1g1112 636 Gene3D - 571 636 - -
Apr1g1112 636 Gene3D - 452 510 - -
Apr1g1112 636 ProSiteProfiles Myb-like domain profile. 572 626 IPR001005 -
Apr1g1112 636 SMART dnaj_3 94 169 IPR001623 -
Apr1g1112 636 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Apr1g1112 636 MobiDBLite consensus disorder prediction 530 577 - -
Apr1g1112 636 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Apr1g1112 636 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 633 - -
Apr1g1112 636 SUPERFAMILY Chaperone J-domain 91 173 IPR036869 -
Apr1g1112 636 CDD DnaJ 95 166 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1112 Apr-Chr1 19318105 19321617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1112 96 295 C2H2 Transcription Factor Family AT1G74250 29.289 4.93e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g1112 DnaJ 7.5e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1112 K09522 - gmx:100806665 1028.08