Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1111 ATGGGTAACTTTTTGATTTTGATATTCTTCTCCGTTATCGTCTCCATGTCACGACCCTCTTATGCATACGATTCGTTGGATCCTTTTGGCAACATCACCATTACATGGGATTTCTTGTCTGACAATGGGGATTCAATCGATGTGACGGTATCAATATACAACTTCCAACTATTTCGCCATGTTGAGGAGCCTGGTTGGAAACTAGGTTGGGCTTGGAAAGGTGATGAGGTGATATGGGCAATATTGGGAGCAGAGGCTACGGAGCAAGGGAATTGCTCAAGATTCAGAGGACAACAGAAACCCCATTGTTGTGAGAAGGAGCCAGTTATTGTTGATCTTATGGCTGGAGCCCCCTACAACATGCAGTCTGCAAATTGCTGTAAAGGAGGGGTCCTTACATCCATCACACAAGATGTTACCAAACACGGTGCCACCTTCCAGATGAATTATATGAAAGCATCAGTAGGTGATACTGGTGCTTTTAGCATGCCAGAAAATTTCACTCTTGGAATTCCTGGTTATAGCTGCGGGACACCATTTCAAGTCCCACCAACCAAGTTTACCAAGGATGGACACCGATGGCAACAAGTCTTGGAGACATGGAATGTAACTTGTATTTTTTCCCAGTTTCTGGCATCACCTGCCCCAAAATGCTGTGTCTCCCTGTCTGCATTTTATTACAGTACAATTGTTCCTTGCCCCACCTGCAGCTGTAATTGCCAAGGGCTACCAGGAGCGAATTGTGTGAATTCTGATAAGACTTCGGTGTTACAACTACCACAAACAAATGGAGCAGAACCACCACCACCAGTGATCAGGTGTTCACATCACATGTGCCCCATTCGTGTTCACTGGCATGTGAAACAAAGTTATAGAGAGTATTGGCGGGTGAAGATCACAATCACAAACCTGAACTTTGTCAAAAACTATTCCCAGTGGAATTTGGTGGTGTTACACCCTAACTTGCGAAGTGTAACACAAGTTTTCAGTTTCAACTACCAACCCCTGCCAATTATGGAAATTTCAGTAAATGACACAGGATTGTTTTGGGGGCTAGAATACTACAATGACATGTTACATGGGGAGAATGGGAATGTGCAAACAGAGGTATTACTACACAAAGACAGAGGAGAGTTCAGCTTCAAAGAAGGATGGGCTTTTCCTAGAAAGATCTCATTCAATGGCTATGAATGTGTCATGCCATCTCCTGACGAGTACCCTCGCCTCCCAAACACAGCTCACATTGCAACAACAAACCCTCCCATACTTTTTCTCTCAATGTTACTGCTCTCAATATTCTAA 1302 0.4386 MGNFLILIFFSVIVSMSRPSYAYDSLDPFGNITITWDFLSDNGDSIDVTVSIYNFQLFRHVEEPGWKLGWAWKGDEVIWAILGAEATEQGNCSRFRGQQKPHCCEKEPVIVDLMAGAPYNMQSANCCKGGVLTSITQDVTKHGATFQMNYMKASVGDTGAFSMPENFTLGIPGYSCGTPFQVPPTKFTKDGHRWQQVLETWNVTCIFSQFLASPAPKCCVSLSAFYYSTIVPCPTCSCNCQGLPGANCVNSDKTSVLQLPQTNGAEPPPPVIRCSHHMCPIRVHWHVKQSYREYWRVKITITNLNFVKNYSQWNLVVLHPNLRSVTQVFSFNYQPLPIMEISVNDTGLFWGLEYYNDMLHGENGNVQTEVLLHKDRGEFSFKEGWAFPRKISFNGYECVMPSPDEYPRLPNTAHIATTNPPILFLSMLLLSIF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1111 433 PIRSF COBRA 1 433 IPR006918 GO:0010215|GO:0031225
Apr1g1111 433 Pfam COBRA-like protein 48 207 IPR006918 GO:0010215|GO:0031225
Apr1g1111 433 PANTHER PROTEIN COBRA 9 429 IPR006918 GO:0010215|GO:0031225
Apr1g1111 433 PANTHER COBRA-LIKE PROTEIN 6 9 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1111 Apr-Chr1 19313090 19316523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1111 5 410 COBRA Gene Family AT1G09790 55.610 1.61e-160 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1111 - - lang:109329241 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1111 1 19313090 19316523 Apr1g1111 1 19313090 19316523 ECH