Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1110 ATGTCTGGTATCAACGTCAACCTTCCAGCAAGAGCTTTTGCTTTTGAGCAAAGCGTGGTGTACAAGGAGTGCAAGCACAACCATGCAGCGTCACTGGGCCGAGTTTCCTATGATGGATGCCATGAGTTCCTCCAAGGGTGCGATGAGAACAATCCCATGCTTTGTGCTGCTTGCGGGTGTCACCGCAGCTTTCACCGCAAACTCACCGTTTACAATCCCATAGCCCAAACTCAAATGGATAACGTTGTGAATGCAACGAGTCCATCACTTGCAGGTCGCGTTGATACCCCCGAAGTGCAGAAGATGAAGCCAAAGAGGAAGAAGAGAACGATGTTCACGCCGGAGCAAAGGAACCGGATGATGAGGTTTGCAGAGAGGTTGGAGTGGAGACCTCAAAGGAATAACAATGACGAAATTCAACGTTTCTGCTTAGAGATGGGAATCAGCCGCAGAATGTTTCTGGTGTGGCTCAGCAACAATCGTCGCCGAGCTACGCAAAATTCTACAACATCAGTGAATTGA 522 0.4904 MSGINVNLPARAFAFEQSVVYKECKHNHAASLGRVSYDGCHEFLQGCDENNPMLCAACGCHRSFHRKLTVYNPIAQTQMDNVVNATSPSLAGRVDTPEVQKMKPKRKKRTMFTPEQRNRMMRFAERLEWRPQRNNNDEIQRFCLEMGISRRMFLVWLSNNRRRATQNSTTSVN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1110 173 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Apr1g1110 173 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 68 IPR006456 -
Apr1g1110 173 Pfam ZF-HD protein dimerisation region 19 68 IPR006456 -
Apr1g1110 173 Gene3D - 93 167 - -
Apr1g1110 173 ProSiteProfiles 'Homeobox' domain profile. 103 167 IPR001356 GO:0003677
Apr1g1110 173 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 18 168 - -
Apr1g1110 173 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 67 IPR006456 -
Apr1g1110 173 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 168 - -
Apr1g1110 173 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 105 161 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1110 Apr-Chr1 19303965 19304486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1110 4 166 ZF-HD Transcription Factor Family AT2G18350 33.000 2.53e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr1g1110 ZF-HD_dimer 7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1110 - - lja:Lj4g3v2313490.1 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1110 1 19303965 19304486 Apr1g1110 1 19303965 19304486 ECH