Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1109 ATGGTGAAGTTCCTGAAGCCAAACAAGGCGGTGATCGTGCTGCAAGGGCGGTACGCCGGGCGGAAGGCGGTGATCGTGCGAGCCTTTGACGAGGGGACGAGGGAGCGCCCCTACGGTCACTGCCTGGTGGCTGGTATAAAGAAGTACCCCAGCAAGGTCATCAAGAAGGACTCTGCCAAGAAGACGGCCAAGAAATCTAGGGTTAAGGCATTCGTGAAGCTGGTCAACTACCAGCACCTTATGCCCACGCGCTACACCCTGGACGTGGATCTGAAGGAAGTGGTCACTCTTGACGCCCTCCACTCCAAGGACAAGAAGGTTACCTCCCTCAAGGAGACCAAGAAGCGCTTCGAGGAGAGATTCAAGACCGGCAAGAACAGGTGGTTCTTCACCAAACTTCGATTCTGA 408 0.5564 MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTLDALHSKDKKVTSLKETKKRFEERFKTGKNRWFFTKLRF* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1109 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Apr1g1109 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
Apr1g1109 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 - -
Apr1g1109 135 SMART kow_9 4 31 IPR005824 -
Apr1g1109 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Apr1g1109 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Apr1g1109 135 CDD KOW_RPL27 6 88 IPR041991 -
Apr1g1109 135 Gene3D - 1 135 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1109 Apr-Chr1 19292632 19293205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1109 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 84.444 3.73e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1109 K02901 - csv:101212413 238.81