Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1107 ATGGAGACTCACTTCAATCACACTCTCTTCGATAGGCGACCCTTCCTCAAGTCTAAGGCTCCCGCTGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCAACTGGTGGGAAGTGCATGCTCTTAAGATGGGTGACAGAGGATACCATAAAGGCCTTGAAAGAAAAGGAAAAAGAGCCTTCAGCACCGGAGCCAGAACCAGAACCTACTACTGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCATTATGAGGGATGTGGAAAGAAATTTCTGGACAGCTCTAAGTTGAAAAGACATTTCCTCATTCATACAGGGGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTGAGGTCTCACATGAAGACACATTCACAAGAAAACTATCATATATGCCCATACCCAGATTGTGGAAAGAGATATGCTCATGAGTACAAGCTAAAGAATCATATTGCATCTCATCACGAAAAGAATGCATCTGTGGATATGGCAAAGTATACTCCGCCATCAGAGAAGCAAACAAAAGCTACTAAACCTTCTGGAGGAACTTATGGCTCAGCTTCATCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCCTACATTCATGAATACAAGCTTAAACTCCATTTAAAGAGGGAGCACCCTGGGCATGATGAAAATGCTGTGCATGCTCTGGCAAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGTGCGAAACGATCAAATGGTAAAAGTCAGAAGCAAAATAAGCCCAAGCCAAACTTGAAGTTGCCTCCTTCCAAAATTTCCCAACGAAAAGGGTCTGTTCCAACTCCTGCCGCTTTAAATGTGATTAAAAAACCTTGGCCTGTTAAAGAAGAAACGTACGATGAAGACAGCGAAGAAACTGAGGAGGATCGTGACAACGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGACGATGATGAGGAAACAGAATATGAAGACTGA 1110 0.4342 METHFNHTLFDRRPFLKSKAPAVKWVKEWVPQDVVATGGKCMLLRWVTEDTIKALKEKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDMAKYTPPSEKQTKATKPSGGTYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHDENAVHALANADNEMDEASDQDAYGAKRSNGKSQKQNKPKPNLKLPPSKISQRKGSVPTPAALNVIKKPWPVKEETYDEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1107 369 Gene3D Classic Zinc Finger 203 273 - -
Apr1g1107 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Apr1g1107 369 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Apr1g1107 369 MobiDBLite consensus disorder prediction 283 298 - -
Apr1g1107 369 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Apr1g1107 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Apr1g1107 369 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Apr1g1107 369 Gene3D Classic Zinc Finger 163 195 - -
Apr1g1107 369 Gene3D Classic Zinc Finger 103 133 - -
Apr1g1107 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Apr1g1107 369 MobiDBLite consensus disorder prediction 271 369 - -
Apr1g1107 369 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Apr1g1107 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Apr1g1107 369 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 5 368 - -
Apr1g1107 369 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Apr1g1107 369 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Apr1g1107 369 PANTHER BNAA03G13270D PROTEIN 5 368 - -
Apr1g1107 369 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Apr1g1107 369 MobiDBLite consensus disorder prediction 203 226 - -
Apr1g1107 369 SMART c2h2final6 136 160 IPR013087 -
Apr1g1107 369 SMART c2h2final6 229 254 IPR013087 -
Apr1g1107 369 SMART c2h2final6 166 190 IPR013087 -
Apr1g1107 369 SMART c2h2final6 106 130 IPR013087 -
Apr1g1107 369 SMART c2h2final6 77 101 IPR013087 -
Apr1g1107 369 Gene3D Classic Zinc Finger 134 161 - -
Apr1g1107 369 Gene3D Classic Zinc Finger 77 102 - -
Apr1g1107 369 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Apr1g1107 369 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Apr1g1107 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Apr1g1107 369 MobiDBLite consensus disorder prediction 206 223 - -
Apr1g1107 369 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1107 10 355 C2H2 Transcription Factor Family AT4G06634 65.847 8.71e-148 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g1107 zf-C2H2 0.0088 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1107 - - zju:107403391 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1107 1 19279029 19282736 Apr1g1107 1 19279029 19282736 ECH