Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1106 ATGGCAGATTTTGATTATGAAGAGCTTCTAAAAGCAACAGATAACTTCAACCCTACAATGATCATAGGAAAAGGAAGCCATGGCATGGTCTATAAAGGTGTAGTATTCAAAGAGAACAGGTTGGTAGCCATAAAGAAGCCATCTCAAGGCCTTCAATCTCTTCACGACAACTCCAAGCTCGAAAACGAAATCCGAGTTCTATCTTCTTTATGTGAAAGCCCTCACCTGGTTAAACTTCTAGGAACTAGTTACGATCATGAAAACTCGTTGAAGAACAAGCACAAGCTCATAGTGATGGAGCTCATGCCCAATGGCTCCCTCCATGACTGGCTCCATGCAGCTAAAACCCCACCCACATGGCCTAAACGTGTCGAAATCGCCATGCAAATCGCTCGTGCGGTGCAGTTTCTCCACGAAGGCAAGCCTTTGGTCATCCACAGAGACATCAAGTCCTCCAATATCTTATTTGATTCCCAATGGAACGCCAAGTTAGCAGATTTTGGACTAGCGGTCAAAGGAGTTGACCCACTGAGTCAACCCGCTGGGACAATAGGGTACATAGACCCGTGTTACACTACGCCTTGTAAACTCAGCACAAAAAATGACATGTTCAGTTTTGGGGTTGTGTTATTGGAAATCATGAGTGGTAGAAAGGCCATTGATGTGTGCAAAACCCCGGCTTCAATTGTGGAATGGGCGATTCCGTTAATCGAAGAAAAACTTTTGGAAGAAATTTGTGACACAACAATAATGGCACTGCCAGAACAAATGTTTAGCTCCATCACTAACTTGTTACACTACGCTGCACGTTGCGTTTCACAAAATGAAGACGATCGTCCATCAGCAAGGGAAGTGGTTGTGGGAATGGAAAAGTGCTTCGTGGAACGAGTCAGATTCTCCATTTGGAGAAGCGTTCTGAAGTGCATGGTGCGGTTGAGAAAGAAGAGGAAGCTGAGTCAGACACGGATACAGTGTATAGCACAAGAAGAGGGTCAGGTTGACAGTGATACTCGTGTGTCACGTGGGAAGCTATCCATCACCATTAAGGATGTTTTGGCTGATGTTACATTCGAGTAA 1077 0.4475 MADFDYEELLKATDNFNPTMIIGKGSHGMVYKGVVFKENRLVAIKKPSQGLQSLHDNSKLENEIRVLSSLCESPHLVKLLGTSYDHENSLKNKHKLIVMELMPNGSLHDWLHAAKTPPTWPKRVEIAMQIARAVQFLHEGKPLVIHRDIKSSNILFDSQWNAKLADFGLAVKGVDPLSQPAGTIGYIDPCYTTPCKLSTKNDMFSFGVVLLEIMSGRKAIDVCKTPASIVEWAIPLIEEKLLEEICDTTIMALPEQMFSSITNLLHYAARCVSQNEDDRPSAREVVVGMEKCFVERVRFSIWRSVLKCMVRLRKKRKLSQTRIQCIAQEEGQVDSDTRVSRGKLSITIKDVLADVTFE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1106 358 Pfam Protein kinase domain 19 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1106 358 SMART serkin_6 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1106 358 Gene3D Transferase(Phosphotransferase) domain 1 102 316 - -
Apr1g1106 358 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524
Apr1g1106 358 PANTHER - 1 356 - -
Apr1g1106 358 ProSiteProfiles Protein kinase domain profile. 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1106 358 PANTHER OS01G0750732 PROTEIN 1 356 - -
Apr1g1106 358 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Apr1g1106 358 SUPERFAMILY Protein kinase-like (PK-like) 4 287 IPR011009 -
Apr1g1106 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1106 Apr-Chr1 19276406 19277482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1106 4 295 Receptor kinase-like Gene Family AT3G59420 42.715 1.56e-60 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Apr1g1106 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1106 - - lang:109334080 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1106 1 19276406 19277482 Apr1g1106 1 19276406 19277482 ECH