Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1104 ATGGAACTATCAGATTTGCAAAACAACAAGAAGAAGCAGAGCAGCAACACAAACAACACAAACACGAACACGAACACAGGTGGTACCACTCATCCCCACCATCACCACCACCAACAACACTCATCTTCAACATCATCACACCTTGTGGTCCCTTTCGATGCAATTGCAAGGCCAAACCCCACCTTCATCATCCCCACCTCATCCCCCTCTTCCTCTTCTTCCTCATCATCGTCCTCGTCCTCCGCCTCCGCCACCACCCTCATTGACGCCTCCCTAGCCATCGCCACCAGATCTGACCATTCCCCCAACAACACCCAACAATTATCCACCACTACCGCCGCCACCGCCGTCACACCCGTCGCCAACCCCCCCAAACGATCCACCAAGGACAGGCACACTAAGGTCGACGGTCGCGGCCGGAGAATCCGAATGCCGGCCACGTGCGCCGCTAGGGTTTTCCAATTGACCCGAGAATTGGGTCACAAGTCCGACGGAGAGACCATCGAGTGGCTGCTCCAGCAGGCCGAGCCGGCGATCATCGCCGCCACCGGAACCGGAACAATCCCGGCCAATTTCTCCACCCTCAACGTGTCCCTCCGGAGCAGCGGCTCCACGCTCTCGGCTCCGCCGTCGAAGTCAGCTCCTCACACGTTCCATGGAGCATTAGCACTCGCTCACCATCCTTACGAGGAAGCTTTTCAACACCCAGCTTTGTTAGGGTTTCACCCTCACCACTCTCAGCACCATCACCCCCAACAACACCACCCACAGCAGCAGCTTCTCTCCGCCGATCAAATCGCCGACGCACTTCCCAGCGGTGGCGGCGACTCCAGCGAGAACTACATGAGGAAACGCTACAGAGAAGATCTCTTCAAAGACGATAACGTTAACACCCAATCACATAACGAAAGCGGTGACGCCTCTTCGCCCAAAGCATTCAAAACAACAAACCTACAACAGTTGCCGAAGCAGCAACAGCAGCAGCAACAACAACAACAACCAGAAGGTGCTTCTTCCGCGTCTGGGCTTCTTCGGCCCACCAACTTGCTACCCGCCACTGCCATGTGGGCCGTGGCACCCGCTGCCGCCAGTGGAGGCACTCCCGGCAGCACAATTTGGATGCTTCCGGTAACTTCCGGTGGTGGTTCTTCTTCTGGGTCGGCAAGTTCGGAGACACAGATGTGGCCTTTTCCTCAGACGGGTTTCATGCCGAGGTTTAACCTTCCGGGTGGTGTCGAATTCCAAGGTGGTCGTGGTTCTCTTCAATTGGGGTCCATGTTAATGCCGCAACAGCAACAACCTTCTCAGCATCTGGGCCTTGCCATGTCTGAATCCAACTTGGGTATGTTGGCTGCTCTCAATGCATACACTAGGGCTGGTTTGAATATTAATTCCGATAATCAACAATCCTTGGAACATCATCATCATCATCATCATCATCAACCTCAGCCTACTGAGAGTGGAGAAGATGCTCCTAATAGCTCCCAGTGA 1491 0.548 MELSDLQNNKKKQSSNTNNTNTNTNTGGTTHPHHHHHQQHSSSTSSHLVVPFDAIARPNPTFIIPTSSPSSSSSSSSSSSSASATTLIDASLAIATRSDHSPNNTQQLSTTTAATAVTPVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQHPALLGFHPHHSQHHHPQQHHPQQQLLSADQIADALPSGGGDSSENYMRKRYREDLFKDDNVNTQSHNESGDASSPKAFKTTNLQQLPKQQQQQQQQQQPEGASSASGLLRPTNLLPATAMWAVAPAAASGGTPGSTIWMLPVTSGGGSSSGSASSETQMWPFPQTGFMPRFNLPGGVEFQGGRGSLQLGSMLMPQQQQPSQHLGLAMSESNLGMLAALNAYTRAGLNINSDNQQSLEHHHHHHHHQPQPTESGEDAPNSSQ* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1104 496 MobiDBLite consensus disorder prediction 60 81 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 8 29 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 374 395 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 470 496 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 98 138 - -
Apr1g1104 496 Pfam TCP family transcription factor 127 288 IPR017887 -
Apr1g1104 496 MobiDBLite consensus disorder prediction 1 46 - -
Apr1g1104 496 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 496 IPR005333 GO:0003700
Apr1g1104 496 MobiDBLite consensus disorder prediction 61 81 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 297 344 - -
Apr1g1104 496 PANTHER TRANSCRIPTION FACTOR TCP8 22 496 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 290 344 - -
Apr1g1104 496 ProSiteProfiles TCP domain profile. 128 182 IPR017887 -
Apr1g1104 496 MobiDBLite consensus disorder prediction 241 260 - -
Apr1g1104 496 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1104 Apr-Chr1 19255776 19258210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1104 125 446 TCP Transcription Factor Family AT1G35560 47.059 1.10e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr1g1104 TCP 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1104 - - vra:106776202 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1104 1 19255776 19258210 Apr1g1104 1 19255776 19258210 ECH