Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1077 ATGAAGGAAGGAAGGAAGGAAGAGGAGAATGGAGAGAGGAAAGAGAAGAGAGGAGGAATTGGTGAGTGGGACTTTGTTGGTGACAGCCTGTCTCCAGCTGTGTCGTCCGAACCTTCCGCTTCGTGGATAAAGGACTTGCTTCGGCTTTGTCCCTACCTACGTGTCGTTACACTGCCGGGAAAATGTGCAAACGAATACGTTGCTAAAAAGCATGCGAAAGAACTGAAGGAAAATAAAACCTCCAAACATTTATGCACGTCCCTAAGGGGAGACAAAGTTGTAACAGAGAAAGATGCTACTACACGCCTCATATCTAATGGAATTGAAGGTTCCTCCACCCTTCTTTCCTCATGTGAAGATAAGAAAGACACGACACAACTATTGCTCCAGATGGGATCAACTGTGTCTGGGGGTTTTGGAAGTGGAGAAGGAGGACAACAACCTAGGATATCTAGGATATTTAGTGTAACGAGAGGGGAAAGAGGAGCACAGGTTCTTGCTGGATGGCCTTCTTGGCTTACTGCAGTTGCTGGGGAAGCCATTAGTGGTTGGATACCTCGTAGAGCTGACTCATTTGAAAAGATGGATAAGATCGGGCAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTTGCATTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGTCAAGAGAAATTATTGTCTTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTCGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGAGCATGATCTTGCAGGGCTTGCTACACTAGCTGGCATGAAGTTTACTGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCATAATCGTGGCGTTATGCATCGTGACATAAAGGGCTCAAATCTTTTGGTTGACAACAATGGCAATCTAAAGATTGGTGATTTTGGGCTTGCAAATTTATTTCAACCATCTCAAGGGCAACCTTTAACTAGTCGTGTAGTAACCTTGTGGTATCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGTTGGTTGTATTCTTGCAGAGTTGTGTGCTGGGAAGCCTATAATGCCTGGACGCACTGAGGTAGAGCAACTTCATAAAATCTTTAAACTTTGCGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTTAAACCTCAACAACCTTACAGACGTGTTGTTTCTCAGACATTTAAGGATTTTCCTATATCTGCACTAAGCCTCTTAGATGTCCTTCTTGCTATAGAACCAAATGATCGCGGAACTGCATCTTTAGCACTTCAGCATGAGTTCTTCACAACAAAGCCACTTCCTTGTCATCCATCAACTTTGCCAAAGCACCCGCCTAGTAAGGAGTTTGATGCCAGACTTCGAGAAGACGAAGCTAGAAGGCGAAAAGCAACAAATAAAGGACATGAAAATGATGAATCAGTTAAGAGAAATTTTAAAGATTCTAAAGTTGTGGCAACACTTGTTACCAATGTTGAAATTCAGACATCAATGGAGAGACAAGGGCAATGTAATTCTAAGTGTATTAGTGAGAAGTATAATCCTGAAGAGGAAGGTGGTTATGGCTTCCCTCTTGAACCTGCAAAGTCAAGAGCACTCAAAGTTTTCTCTTATTTTGGCCATTCAATGCATCCGAGTAAATATGGATCTTCATGCAATATGAACTTGAAAGAGGAAGATGTTCTTACTTGTCCAGATCATGCCTTTAGAACAAGAAACTCTAAGTTGAGAAAACAAAAATCCTATTGGCATGGTGGAATTGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGGTTCAGTGCTTGATATGAGAGGAAACTTAAGTGTAAATTTGCATTGGCCAGAGGATCATTTTGGTATGAGATATAGCCAGCTAGCTGACGTCAACATTTGTTATGCTCCCAAAAATAGTCTCATCCACCATTCTGGACCATTGCTGGCTCCAGAGAATAATCTTGAAGAAATGCTTAAGGAACATGAAAGGCAAATCCAACAAGCTGTTCGCAAAGCTCATTTGGGTAAAGAGAATATGATAAAGTGA 2193 0.4136 MKEGRKEEENGERKEKRGGIGEWDFVGDSLSPAVSSEPSASWIKDLLRLCPYLRVVTLPGKCANEYVAKKHAKELKENKTSKHLCTSLRGDKVVTEKDATTRLISNGIEGSSTLLSSCEDKKDTTQLLLQMGSTVSGGFGSGEGGQQPRISRIFSVTRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKMDKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMSREIIVLRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLAGLATLAGMKFTEAQIKCYMQQLLRGLEHCHNRGVMHRDIKGSNLLVDNNGNLKIGDFGLANLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSVGCILAELCAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYRRVVSQTFKDFPISALSLLDVLLAIEPNDRGTASLALQHEFFTTKPLPCHPSTLPKHPPSKEFDARLREDEARRRKATNKGHENDESVKRNFKDSKVVATLVTNVEIQTSMERQGQCNSKCISEKYNPEEEGGYGFPLEPAKSRALKVFSYFGHSMHPSKYGSSCNMNLKEEDVLTCPDHAFRTRNSKLRKQKSYWHGGIAKLSRFSNSVAVRGGSVLDMRGNLSVNLHWPEDHFGMRYSQLADVNICYAPKNSLIHHSGPLLAPENNLEEMLKEHERQIQQAVRKAHLGKENMIK* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1077 730 SUPERFAMILY Protein kinase-like (PK-like) 186 483 IPR011009 -
Apr1g1077 730 MobiDBLite consensus disorder prediction 1 22 - -
Apr1g1077 730 Gene3D Phosphorylase Kinase; domain 1 179 274 - -
Apr1g1077 730 ProSiteProfiles Protein kinase domain profile. 192 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1077 730 Gene3D Transferase(Phosphotransferase) domain 1 275 516 - -
Apr1g1077 730 SMART serkin_6 192 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1077 730 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Apr1g1077 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Apr1g1077 730 CDD STKc_CDK9_like 192 476 - -
Apr1g1077 730 Coils Coil 700 727 - -
Apr1g1077 730 PANTHER KINASE CDK9, PUTATIVE-RELATED 140 723 - -
Apr1g1077 730 MobiDBLite consensus disorder prediction 505 524 - -
Apr1g1077 730 PANTHER CELL DIVISION PROTEIN KINASE 140 723 - -
Apr1g1077 730 Pfam Protein kinase domain 192 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1077 Apr-Chr1 18935480 18945649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1077 184 524 Core Cell Cycle Gene Families AT5G10270 48.596 6.47e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr1g1077 Pkinase 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1077 - - aprc:113851993 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1077 1 18935480 18945649 Apr1g1077 1 18935480 18945649 ECH