Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1075 ATGGGAAGGAAAAAGACAGAGGATGCAGGCCCATCTGCTAAAACTAAGGGAAGTAGCAAAGATGCTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCCTCTAGTAAGCCCAAGCCAAAAGCTGCTCCAAAAGCTTCAACATACACTGATGGTATTGATCTTCCTCCATCTGATGATGAAGATGATGAAGTTCTCTTGGAAGATGAGCAACAGCAAAATAATGTGCCTAAGAGGTCCAGTCAGACTCAGAGGCCTGAATTGAAGCCACTTGAGGTGTCTATTGCAGACAAAGAGTTGAAAAAGCGTGAGAAGAAGGATATTTTAGCTGCCCATGCTGCAGAGCAAGCAAAGAAGGAAGCTCTTAAGGATGATCACGATGCTTTCACTGTGGTGATTGGAAGCCGGGCTTCTGTGCTTGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGTGGTAAAGAACTTCTGAAGAATGCATCGGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAAAGGGGAAGTCCACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCAAAGAATATTGATGTGCTTTTGGTCGAGCAGGAGGTAGTCGGTGATGAAAAAACAGCACTTGAAGCAGTTGTTTCAGCTAATGATGAACTTGTTAAAATTCGACAAGAAGTTGCCTCTCTGCAGAATGCAGCTTCTATTGAAGAAAGTGTAGACAGAGATAATAATTATGAGGAAGATGATACAGGAGAGAAATTAGCAGAGCTTTATGAAAAACTACAACTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATTTTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGTCGTCCAACAAAATCCTTCAGTGGTGGCTGGCGGATGAGAATTTCTTTAGCTCGAGCACTATTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTTTGGTGGTTGTCTCACACGATAGAGATTTTCTCAACACAGTTTGTACTGAGATTATTCATCTTCATGATTTGAAACTTCACTTCTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTATGAACAGCGTCGAAAAGAGATGAATAAGAAGTATGAAATTTATGACAAACAGTTGAAAGCAGCTAAAAGGAGTGGAAACCGGGTTCAGCAAGAAAAGGTTAAAGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCTTCTAAAGGCAAAGGCAAGGGCAAGGTTGATGATGATGATGCCCCCCTAGAGGTACCTCAGAAGTGGAGGGACTACAGCGTGGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACAGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCTAATGGCGCTGGAAAATCTACATTGCTAAATCTTCTGGCCGGTGATCTGGTTCCGTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACTATGGATGAAACACCTGTTCAGTATCTTCTTCGTCTCCATCCAGATCAAGAGGGACTTAGCAAGCAGGAGGCTGTCCGGGGAAAACTTGGTAAGTTTGGGTTACCTAGTCATAACCATCTTACTCCTATTGCCAAACTATCGGGAGGGCAGAAAGCCCGGGTGGTCTTCACATCAATATCCATGTCAAAACCCCACATTTTATTGTTAGATGAACCCACCAATCATTTGGATATGCAAAGTATTGATGCATTGGCTGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCATGACTCAAGATTGATATCACGTGTGTGTGAGGACGAAGAAAGGAGCCAAATCTGGGTTGTGGAGGATGGTACTGTTAAAACTTTCCCCGGCACATTTGAGGACTACAAAGACGACTTGCTGAGAGAGATCAAAGCTGAAGTTGATGATTGA 2187 0.433 MGRKKTEDAGPSAKTKGSSKDASKKEKFSVSAMLASMDEKPDKPKKVSSSSKPKPKAAPKASTYTDGIDLPPSDDEDDEVLLEDEQQQNNVPKRSSQTQRPELKPLEVSIADKELKKREKKDILAAHAAEQAKKEALKDDHDAFTVVIGSRASVLDGEDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDEKTALEAVVSANDELVKIRQEVASLQNAASIEESVDRDNNYEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRVQQEKVKDRAKFAAAKEASKGKGKGKVDDDDAPLEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRGKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKTFPGTFEDYKDDLLREIKAEVDD* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1075 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 501 726 IPR003439 GO:0005524
Apr1g1075 728 MobiDBLite consensus disorder prediction 1 111 - -
Apr1g1075 728 PANTHER - 5 728 - -
Apr1g1075 728 Pfam ABC transporter 518 653 IPR003439 GO:0005524
Apr1g1075 728 Pfam ABC transporter 183 354 IPR003439 GO:0005524
Apr1g1075 728 Coils Coil 418 438 - -
Apr1g1075 728 Gene3D - 165 450 IPR027417 -
Apr1g1075 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 715 IPR027417 -
Apr1g1075 728 SMART AAA_5 192 398 IPR003593 -
Apr1g1075 728 SMART AAA_5 527 703 IPR003593 -
Apr1g1075 728 CDD ABCF_EF-3 501 703 - -
Apr1g1075 728 Coils Coil 244 264 - -
Apr1g1075 728 MobiDBLite consensus disorder prediction 85 103 - -
Apr1g1075 728 MobiDBLite consensus disorder prediction 453 472 - -
Apr1g1075 728 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 728 - -
Apr1g1075 728 Gene3D - 473 727 IPR027417 -
Apr1g1075 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 423 IPR027417 -
Apr1g1075 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 168 429 IPR003439 GO:0005524
Apr1g1075 728 MobiDBLite consensus disorder prediction 70 84 - -
Apr1g1075 728 CDD ABCF_EF-3 168 399 - -
Apr1g1075 728 ProSitePatterns ABC transporters family signature. 326 340 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1075 Apr-Chr1 18923096 18926422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1075 501 704 Calmodulin-binding Proteins AT2G36910 27.803 1.62e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1075 K06184 - gmx:100806865 1218.37