Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1073 ATGTCTGAAGAGGCTGGATCTATGTTGGTAGTTTACGATGATCCCTCTGACCAACGCTCACTGTCTTTGGACGATGCAAGCAGCACAGAGGAGTCACCTGATGAAACCAGGCTCTCCTTAGAAACAACTAATGATGCTATTCCATATATTGGTCAAAGATTTGCCACTCACGACGCTGCTTATGAATTCTATAGTGAATTTGCCAAGAGGAGTGGTTTTTCTATTAGACGTCACCGGACGGAGGGAAAAGATGGTGTTGGAAAGGGACTTACTAGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTTAAAACATCAACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGCTGTGGGTGTCAGGCTTACATGCGGATAAGCAAAACAACAGAATTTGGATCTCCAGAATGGCGCGTGACTGGTTTTGCAAACCACCATAATCATGAACTTTTAGAACCAAACCAAGTTCGATTCCTTCCCGCATACAGAACTATCTCGGATGCTGACAAGAACCGAATACTCATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCATTTACTGAAAAGGATGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCCGAAGAAGAAACCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTATACACTTGATGCAAACAGCCGTTTGGAGAACATTGCCTGGTCATATGCTTCATCAATACAATTGTATGATATATTTGGTGATGCTGTGGTGTTTGATACCACACACCGGCTAACTGCATTTGACATGCCACTAGGGATATGGGTTGGAATAAATAATTATGGTATGCCTTGCTTTTTTGGCTGCGTGCTTCTACGAGATGAAACTGTGAGGTCATTTTCCTGGGCACTGAAGGCTTTCTTAGGGTTTATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCGACAACAAAACATGCTTTCTGCATATGGATGATCGTAGCAAAGTTTCCATCATGGTTTAATGCAGTTCTAGGGGAACGCTACAATGAATGGAAGGCTGAATTTTATAGACTTTATAACCTTGAGTCAGTTGAGGATTTTGAGCTAGGCTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGCTCACGCTCTCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCAGGCATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTCATTCAACGATTTCTGAGTGCACAAACTCGGCTTGCACACTTTGTTGAGCAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTGAAAACAGGGGCCCCAATGGAATCACATGCAGCCACAGTCCTTACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAATTGAAGATGGTTTTCTTGTGAGGCATCACACAAAAGCTGAGGGAGGTCGGAAAGTTTATTGGGCCCCTCAGGAAGGAATTATAAGTTGTAGTTGCCACCAGTTTGAGTTCACTGGTATTCTCTGCAGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCCATTAGGTGGCGTCGAATCAGCATGCCTTCTTCTAAGCTTATCCAAAGTGCACCAAATGATCATGCCGAAAGAGTTAAGTTATTACAAAATATGGTTTCATCTTTGATTACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACAAGTTTCCATCCTTCTGTCTCGCATACGAGAGCAACCAATTTCCTTACAAGGTATCAGAGAATTTCCTTCCGTGAATAGGAATCTTTGA 2040 0.4123 MSEEAGSMLVVYDDPSDQRSLSLDDASSTEESPDETRLSLETTNDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGSPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKEKDPNFKFEYTLDANSRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSSKLIQSAPNDHAERVKLLQNMVSSLITESAKSKERLDIATEQVSILLSRIREQPISLQGIREFPSVNRNL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1073 679 SMART 26again6 564 591 IPR006564 GO:0008270
Apr1g1073 679 Pfam MULE transposase domain 278 370 IPR018289 -
Apr1g1073 679 MobiDBLite consensus disorder prediction 1 42 - -
Apr1g1073 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Apr1g1073 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 12 660 - -
Apr1g1073 679 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Apr1g1073 679 Pfam SWIM zinc finger 560 587 IPR007527 GO:0008270
Apr1g1073 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 660 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1073 Apr-Chr1 18913689 18917751 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr1g1073 MULE 3.2e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1073 - - gmx:100810717 1349.73