Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g1067 | ATGGAAGAGAAGTGGGGTGAAGGTACGAGAATGAGTATAAATCGAAAGGAGAAGCGGAAGGCAATGAAGAAAATGAAGCGGAAGCAACTGAGGAAGGAAGCAGCGGAGAGGGAGCGGCGGGAGGAGGAGGAGCGTCTCAACGATCCCGGGGAGCAGAGGCGGTTGCAGTTGCTGGAGCAGGAAGAGGCTGAGAGAATGGAAAGGGACAGGATCCAATTCGAGGAGAGAGAGAGGGCTTGGATGGAGATGATCGACCAACAACAGCTTCAGCAGCAACAACAATCCCATTCCAACGAGAGAGAGGACCAAATTGATGATGACGAATATGAATATGTTGAGGAAGAAGGGCCTCCACAGATTATTTGGCAAGGAAACGAGATCATCCTCAAGAAGAAACAAATCAGAGTTAGGGTTAGGGACAGGGACAGGGACAAGGACAAGGACAAGGATGAGTATGAGGATGAGTATAGACCTACATCCAATCCCTTTCCCCCAGAATCGCCCGCTCAGGCTCAGATGCTGGAGAATGTTGCTCAACAAGTTCCCAATTTCGGAACCGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACCGGAGCATGTCGTTTTGGTCTACGCTGTAGCAGAGTCCATTTTTACCCTGACAAGTCCTGCACCCTTCTCATGAAAAACATGTACAACGGTCCAGGCCTTTCTTGGGAGCAAGATGAGGGCCTTGAGTATACAGATGAAGAGGTTGAACGTTGTTTTGAAGAATTTTATGAGGATGTTCACACGGAGTTCCTGAAATTTGGAGAAATTGTGAACTTTAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTATAAATTGTTGGATTCTGCTCTGCTTGCTTATAACTCTGTTAATGGTCGCTACTTTGCTGGGAAACAGGTAAGTTGTCAATTTGTTAATTTGACGAGGTGGAAGGTTGCCATATGTGGCGAATATATGAAATCAGGTTTCAAGACTTGTTCACGTGGAACAGCATGCAATTTTATCCACTGTTTTCCTAATCCTGGTGGAGACTATGAATGGGCAGATTCTGACAAACCCCCCCCACGGTACTGGGTAAAAAAGATGGTCGCTTTATTTGGTTATTCTGATGATTATGAGACTTTAAAGGAGCAGGGGAATTTGAGTTTGCCAAAAAACACCTCAAAAACAGATTCTGACAGGTATCACTCAAGAAGATTGAGATCTAGGGAGATGGATCAGTTAAATTGTGGTCGTTCTGGTAGAAGAAAACAAGAAGACAAAAAAACGCGAAGAACTCCAGATGAGGAATGGAATGCCAACTTTGATTTTGACGGGGAAAGGTTAGAAAAAGAGGAAAACAGGGAAAAGCACCATGAACTCACTAGGAATAGCTCATTTAACAGGAACAAGGATGACAATGGTCGAAGCTATGAAGAGGATTCTGATGTGGATTGGGATACTAGGGAGAATGAAAAACAGCATGGCAGAGAAGGAAAAAACTCGAGAAAGTGGAAGAGAGATAGTAGGGACTGGATTTATGAGGTTGAATCAGATGGGGAGAGAGATAGAAAAAGGCATCACATTGGCAAAAGAAAAAGCTCAAGACATCAGAGTGGCAATGATTCTGACTCTGACAACAATTTGCTTGATAGAGAGATGGAAAGACAACATGGTTACTGTAGGAAAAGCTTGAGACACAGAAGATCTGGTCTTCAGGATGACTATAAATACTTAGAAAATGAAAATGAGAAAGTTGATGGAGGTTGGTCTCAGAGGCAGAGTGACAAACGAGAACATCGTCACAAAAAGAAGAGATCAAGGGGTTAA | 1845 | 0.4352 | MEEKWGEGTRMSINRKEKRKAMKKMKRKQLRKEAAERERREEEERLNDPGEQRRLQLLEQEEAERMERDRIQFEERERAWMEMIDQQQLQQQQQSHSNEREDQIDDDEYEYVEEEGPPQIIWQGNEIILKKKQIRVRVRDRDRDKDKDKDEYEDEYRPTSNPFPPESPAQAQMLENVAQQVPNFGTEQDKAHCPFHLKTGACRFGLRCSRVHFYPDKSCTLLMKNMYNGPGLSWEQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSRGTACNFIHCFPNPGGDYEWADSDKPPPRYWVKKMVALFGYSDDYETLKEQGNLSLPKNTSKTDSDRYHSRRLRSREMDQLNCGRSGRRKQEDKKTRRTPDEEWNANFDFDGERLEKEENREKHHELTRNSSFNRNKDDNGRSYEEDSDVDWDTRENEKQHGREGKNSRKWKRDSRDWIYEVESDGERDRKRHHIGKRKSSRHQSGNDSDSDNNLLDREMERQHGYCRKSLRHRRSGLQDDYKYLENENEKVDGGWSQRQSDKREHRHKKKRSRG* | 615 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 29 | 68 | - | - | |
Apr1g1067 | 614 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 219 | 319 | IPR000504 | GO:0003723 | |
Apr1g1067 | 614 | SMART | c3hfinal6 | 321 | 350 | IPR000571 | GO:0046872 | |
Apr1g1067 | 614 | SMART | c3hfinal6 | 188 | 214 | IPR000571 | GO:0046872 | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 138 | 168 | - | - | |
Apr1g1067 | 614 | SUPERFAMILY | RNA-binding domain, RBD | 251 | 319 | IPR035979 | GO:0003676 | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 391 | 509 | - | - | |
Apr1g1067 | 614 | PRINTS | U2 auxiliary factor small subunit signature | 193 | 212 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | PRINTS | U2 auxiliary factor small subunit signature | 212 | 232 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | PRINTS | U2 auxiliary factor small subunit signature | 248 | 263 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | PRINTS | U2 auxiliary factor small subunit signature | 276 | 298 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | PRINTS | U2 auxiliary factor small subunit signature | 303 | 327 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | PRINTS | U2 auxiliary factor small subunit signature | 341 | 353 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | ProSiteProfiles | Zinc finger C3H1-type profile. | 321 | 351 | IPR000571 | GO:0046872 | |
Apr1g1067 | 614 | SMART | rrm2_1 | 249 | 315 | IPR003954 | GO:0003676 | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 584 | 614 | - | - | |
Apr1g1067 | 614 | Coils | Coil | 567 | 587 | - | - | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 138 | 157 | - | - | |
Apr1g1067 | 614 | PANTHER | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 15 | 611 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 82 | 103 | - | - | |
Apr1g1067 | 614 | Coils | Coil | 13 | 47 | - | - | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Apr1g1067 | 614 | Gene3D | - | 218 | 317 | IPR012677 | - | |
Apr1g1067 | 614 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 192 | 212 | IPR000571 | GO:0046872 | |
Apr1g1067 | 614 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 322 | 349 | IPR000571 | GO:0046872 | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 540 | 554 | - | - | |
Apr1g1067 | 614 | ProSiteProfiles | Zinc finger C3H1-type profile. | 187 | 215 | IPR000571 | GO:0046872 | |
Apr1g1067 | 614 | PANTHER | ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 | 15 | 611 | - | - | |
Apr1g1067 | 614 | CDD | RRM_U2AFBPL | 220 | 318 | - | - | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 523 | 554 | - | - | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 401 | 509 | - | - | |
Apr1g1067 | 614 | MobiDBLite | consensus disorder prediction | 584 | 601 | - | - |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Apr1g1067 | zf-CCCH | 4.4e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g1067 | K24273 | - | gmx:100789091 | 721.465 |