Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1067 ATGGAAGAGAAGTGGGGTGAAGGTACGAGAATGAGTATAAATCGAAAGGAGAAGCGGAAGGCAATGAAGAAAATGAAGCGGAAGCAACTGAGGAAGGAAGCAGCGGAGAGGGAGCGGCGGGAGGAGGAGGAGCGTCTCAACGATCCCGGGGAGCAGAGGCGGTTGCAGTTGCTGGAGCAGGAAGAGGCTGAGAGAATGGAAAGGGACAGGATCCAATTCGAGGAGAGAGAGAGGGCTTGGATGGAGATGATCGACCAACAACAGCTTCAGCAGCAACAACAATCCCATTCCAACGAGAGAGAGGACCAAATTGATGATGACGAATATGAATATGTTGAGGAAGAAGGGCCTCCACAGATTATTTGGCAAGGAAACGAGATCATCCTCAAGAAGAAACAAATCAGAGTTAGGGTTAGGGACAGGGACAGGGACAAGGACAAGGACAAGGATGAGTATGAGGATGAGTATAGACCTACATCCAATCCCTTTCCCCCAGAATCGCCCGCTCAGGCTCAGATGCTGGAGAATGTTGCTCAACAAGTTCCCAATTTCGGAACCGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACCGGAGCATGTCGTTTTGGTCTACGCTGTAGCAGAGTCCATTTTTACCCTGACAAGTCCTGCACCCTTCTCATGAAAAACATGTACAACGGTCCAGGCCTTTCTTGGGAGCAAGATGAGGGCCTTGAGTATACAGATGAAGAGGTTGAACGTTGTTTTGAAGAATTTTATGAGGATGTTCACACGGAGTTCCTGAAATTTGGAGAAATTGTGAACTTTAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTATAAATTGTTGGATTCTGCTCTGCTTGCTTATAACTCTGTTAATGGTCGCTACTTTGCTGGGAAACAGGTAAGTTGTCAATTTGTTAATTTGACGAGGTGGAAGGTTGCCATATGTGGCGAATATATGAAATCAGGTTTCAAGACTTGTTCACGTGGAACAGCATGCAATTTTATCCACTGTTTTCCTAATCCTGGTGGAGACTATGAATGGGCAGATTCTGACAAACCCCCCCCACGGTACTGGGTAAAAAAGATGGTCGCTTTATTTGGTTATTCTGATGATTATGAGACTTTAAAGGAGCAGGGGAATTTGAGTTTGCCAAAAAACACCTCAAAAACAGATTCTGACAGGTATCACTCAAGAAGATTGAGATCTAGGGAGATGGATCAGTTAAATTGTGGTCGTTCTGGTAGAAGAAAACAAGAAGACAAAAAAACGCGAAGAACTCCAGATGAGGAATGGAATGCCAACTTTGATTTTGACGGGGAAAGGTTAGAAAAAGAGGAAAACAGGGAAAAGCACCATGAACTCACTAGGAATAGCTCATTTAACAGGAACAAGGATGACAATGGTCGAAGCTATGAAGAGGATTCTGATGTGGATTGGGATACTAGGGAGAATGAAAAACAGCATGGCAGAGAAGGAAAAAACTCGAGAAAGTGGAAGAGAGATAGTAGGGACTGGATTTATGAGGTTGAATCAGATGGGGAGAGAGATAGAAAAAGGCATCACATTGGCAAAAGAAAAAGCTCAAGACATCAGAGTGGCAATGATTCTGACTCTGACAACAATTTGCTTGATAGAGAGATGGAAAGACAACATGGTTACTGTAGGAAAAGCTTGAGACACAGAAGATCTGGTCTTCAGGATGACTATAAATACTTAGAAAATGAAAATGAGAAAGTTGATGGAGGTTGGTCTCAGAGGCAGAGTGACAAACGAGAACATCGTCACAAAAAGAAGAGATCAAGGGGTTAA 1845 0.4352 MEEKWGEGTRMSINRKEKRKAMKKMKRKQLRKEAAERERREEEERLNDPGEQRRLQLLEQEEAERMERDRIQFEERERAWMEMIDQQQLQQQQQSHSNEREDQIDDDEYEYVEEEGPPQIIWQGNEIILKKKQIRVRVRDRDRDKDKDKDEYEDEYRPTSNPFPPESPAQAQMLENVAQQVPNFGTEQDKAHCPFHLKTGACRFGLRCSRVHFYPDKSCTLLMKNMYNGPGLSWEQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSRGTACNFIHCFPNPGGDYEWADSDKPPPRYWVKKMVALFGYSDDYETLKEQGNLSLPKNTSKTDSDRYHSRRLRSREMDQLNCGRSGRRKQEDKKTRRTPDEEWNANFDFDGERLEKEENREKHHELTRNSSFNRNKDDNGRSYEEDSDVDWDTRENEKQHGREGKNSRKWKRDSRDWIYEVESDGERDRKRHHIGKRKSSRHQSGNDSDSDNNLLDREMERQHGYCRKSLRHRRSGLQDDYKYLENENEKVDGGWSQRQSDKREHRHKKKRSRG* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1067 614 MobiDBLite consensus disorder prediction 29 68 - -
Apr1g1067 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 319 IPR000504 GO:0003723
Apr1g1067 614 SMART c3hfinal6 321 350 IPR000571 GO:0046872
Apr1g1067 614 SMART c3hfinal6 188 214 IPR000571 GO:0046872
Apr1g1067 614 MobiDBLite consensus disorder prediction 138 168 - -
Apr1g1067 614 SUPERFAMILY RNA-binding domain, RBD 251 319 IPR035979 GO:0003676
Apr1g1067 614 MobiDBLite consensus disorder prediction 391 509 - -
Apr1g1067 614 PRINTS U2 auxiliary factor small subunit signature 193 212 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 PRINTS U2 auxiliary factor small subunit signature 212 232 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 PRINTS U2 auxiliary factor small subunit signature 248 263 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 PRINTS U2 auxiliary factor small subunit signature 276 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 PRINTS U2 auxiliary factor small subunit signature 303 327 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 PRINTS U2 auxiliary factor small subunit signature 341 353 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 ProSiteProfiles Zinc finger C3H1-type profile. 321 351 IPR000571 GO:0046872
Apr1g1067 614 SMART rrm2_1 249 315 IPR003954 GO:0003676
Apr1g1067 614 MobiDBLite consensus disorder prediction 584 614 - -
Apr1g1067 614 Coils Coil 567 587 - -
Apr1g1067 614 MobiDBLite consensus disorder prediction 138 157 - -
Apr1g1067 614 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 15 611 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr1g1067 614 MobiDBLite consensus disorder prediction 1 15 - -
Apr1g1067 614 MobiDBLite consensus disorder prediction 82 103 - -
Apr1g1067 614 Coils Coil 13 47 - -
Apr1g1067 614 MobiDBLite consensus disorder prediction 1 68 - -
Apr1g1067 614 Gene3D - 218 317 IPR012677 -
Apr1g1067 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 212 IPR000571 GO:0046872
Apr1g1067 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 349 IPR000571 GO:0046872
Apr1g1067 614 MobiDBLite consensus disorder prediction 540 554 - -
Apr1g1067 614 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Apr1g1067 614 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 15 611 - -
Apr1g1067 614 CDD RRM_U2AFBPL 220 318 - -
Apr1g1067 614 MobiDBLite consensus disorder prediction 523 554 - -
Apr1g1067 614 MobiDBLite consensus disorder prediction 401 509 - -
Apr1g1067 614 MobiDBLite consensus disorder prediction 584 601 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g1067 zf-CCCH 4.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1067 K24273 - gmx:100789091 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1067 1 18810460 18820468 Apr1g1067 1 18810460 18820468 ECH