Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1065 ATGGCTTCCGCCGCCGCAGCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCTTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTTTATTACTTCCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCACCTTCGAGCTGAACCTGAGACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTTACTAGCCTTGATGAGGCATTGCCCGAACCTCCAAGGTGTACAGTACATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCTCTGGATATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGAGGTGAAAATGGAGAGCTGCGAGTTGGTGTTAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTTATATCCAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCGTCTCATGCCATTGCCACTGGAACTTTGTTTTCTGTATTTTACAAACCCAGAACAAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCGAAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCGGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAATAAATCATCAGTCTGGGCTGATTCTGAGTGGCGATCGCTGAAGGTTCAATGGGATGAACCCTCATCAATTTTGCGTCCTGATCGAGTTTCGCCATGGGAATTGGAGCCACTTATGTCTACCCCCCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGACCACGGCCTCCTGTTCTACCTTCAGCAATGCCTGATTCATCTCTGCAAGGAGTATGGAAATCACCAGTTTATCGTGACCCTCAACATGGGCAAGATCTCTATCCATCATCTAAATTCAATTCTACTGCAACTAGCTTTCTTGGTTTTGGTGGGAATTGCTCTGCTTCCAACATGTCAACATATTGGTCTAGTGCGATGGAAAAAACGACAGAATCTTTTTCACCTGTAGCAATTAAAGAATCTGGAGAAAAGAGACAGGGCACAGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAGAATTCTAGTGCAGAGGAAACTCTACCAACATTCGCTTTGTCAGGAAGGGTGGGTGATGATAGGTCCCTTCCATCATTGGATGCTGAGTCTGACCAGCTTTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCAGTAAGCTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAGAGCAGGCACATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGATTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATCAAGGGCGAGCTCTGTGGATCCACTAAAAAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACTACTGAGGAGGTGAAGAAGCTTTCTCCCAAAATAGGGCTTCCAATCAATGATGAAGTTAAACCTAGCAAAATGGATTCTGATGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTTGGGCCTGGTTGCTAA 1980 0.4455 MASAAAAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSLDEALPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLMSTPPTNSQPSQRNKRPRPPVLPSAMPDSSLQGVWKSPVYRDPQHGQDLYPSSKFNSTATSFLGFGGNCSASNMSTYWSSAMEKTTESFSPVAIKESGEKRQGTGNGCRLFGIQLLENSSAEETLPTFALSGRVGDDRSLPSLDAESDQLSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRHIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTTEEVKKLSPKIGLPINDEVKPSKMDSDAVVNPEDQSSIVGPGC* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1065 659 Pfam AUX/IAA family 533 625 IPR033389 -
Apr1g1065 659 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr1g1065 659 Gene3D - 116 221 IPR015300 -
Apr1g1065 659 ProSiteProfiles PB1 domain profile. 535 628 IPR000270 GO:0005515
Apr1g1065 659 Gene3D - 282 354 - -
Apr1g1065 659 MobiDBLite consensus disorder prediction 347 388 - -
Apr1g1065 659 Pfam Auxin response factor 245 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr1g1065 659 PANTHER AUXIN RESPONSE FACTOR 9 5 640 - -
Apr1g1065 659 Gene3D - 530 624 - -
Apr1g1065 659 Pfam B3 DNA binding domain 119 219 IPR003340 GO:0003677
Apr1g1065 659 MobiDBLite consensus disorder prediction 494 511 - -
Apr1g1065 659 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Apr1g1065 659 CDD B3_DNA 117 219 IPR003340 GO:0003677
Apr1g1065 659 SUPERFAMILY CAD & PB1 domains 536 612 - -
Apr1g1065 659 MobiDBLite consensus disorder prediction 489 511 - -
Apr1g1065 659 MobiDBLite consensus disorder prediction 638 659 - -
Apr1g1065 659 SUPERFAMILY DNA-binding pseudobarrel domain 104 248 IPR015300 -
Apr1g1065 659 MobiDBLite consensus disorder prediction 350 365 - -
Apr1g1065 659 SMART B3_2 119 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1065 Apr-Chr1 18794839 18807740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1065 2 653 B3 DNA Binding Superfamily AT1G59750 72.561 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr1g1065 AUX_IAA 1.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1065 K14486 - gmx:100793224 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1065 1 18794839 18807740 Apr1g1065 1 18794839 18807740 ECH