Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1063 ATGTCAAGTAATGCATTAACTCTTCTTATCTTGGTTCTGAATTTTTCCTTATTTCCAGCCACCTCTGCTATGAACCAGGAAGGTGTCTCTCTACTTTCATGGCTCTCAACATTCAATTCCTCTAATTCTGCTACTTCATTTTCTTCATGGGATCCAACCCACAAAAATCCATGCAAATGGGATTACATAAAATGTTCCAAAGAAGGACTTGTTTCAGAGATTATAATAACATCACTTGATCTTGGCACCAGCTTCCCTATACAGCTCCTTTCTTTTGGCAACCTTACCACTCTAGTCATCTCAAAAGCAAATCTCACTGGTGAGATTCCTGGTGCTGTAGGAAACTTGTCATCTTTGGTTACCTTAGACCTTAGCTGTAATGCTTTGTCAGGAACCATTCCAACTGAAATAGGAAAATTATACAAATTGAAGTGGTTATCTTTGAATTCAAACTCATTACATGGTGGAATTCCTACCCAAATTGGAAACTGTTCAAAACTTCAGCTGCTTGAACTGTTTGATAACCAACTCTCTGGCATGATTCCGGGAGAAATAGGCCTCTTGAGGGACCTTGAAACGCTCCGTGCCGGTGGAAACCCGGGTATTCATGGTGAGATTCCAATGCAGATATCAAATTGCAAGGCTCTAGTTTATCTAGGCCTTGCAGATACTGGGATATCAGGGGAGATTCCACCAAGTATAGGAGAACTTACAAGTCTCAAGACACTTCAAATCTATACTGCACACCTCACAGGTCACATACCACCAGAGATTCAAAACTGTTCAGCCTTGGAGGAATTGTTTCTCTATGAAAACCAGCTTTCTGGAAATATTCCTAATGAATTAGGTTCCCTGAAAAGCCTCAGAAAGGTATTGCTATGGCAGAATAATTTTACTGGAACAATTCCAGAAGGTCTAGGCAACTGTACAAACCTGAAAGTCATAGACTTTTCTTTGAATTCTCTGGTTGGTGAACTTCCAGTGACTCTCAGGAGTCTAATCTCATTGGAGGAGCTTCTTTTGTCTAATAATAACATCTCTGGAGAGATACCTTCCTATATTGGCAACTTCACCAGCATGAAGCAACTGGAATTGGATAACAACAGATTCTCTGGGGAGATTCCACCTGTCTTGGGGCAACTGAAAGAACTCACCTTGTTCTATGCCTGGCAGAATCAGCTCCATGGAAGCATACCAACACAACTCTCCAACTGTGAGAAACTTCAAGCACTTGATCTTTCACATAATTTCCTCACCGGGTCCATCCCAAGATCACTCTTTCATCTAGAGAATTTAACTCAATTATTGTTGTTGTCAAATAGACTTTCAGGTCCAGTTCCTCCAGATATTGGCAGCTGCACTAGCTTGATTAGGTTAAGGCTGGGATCAAACAACTTCACTGGTCAAATTCCACCAGAAATAGGCCTTTTAAGCAGTTTGAGTTTTCTTGAATTATCAGATAATCTACTCAGCGGAGAGATACCCTCCAAGATAGGTAACTGTGCTAAGCTAGAAATGCTTGACTTGCACAGCAATCAGCTGCAAGGACCGATTCCTTCCTCATTAGAATTTCTAGCTGTTCTTAATGTCTTGGATCTATCTGCAAACAGAATAACTGGAAACATTCCTGAAAATTTGGGCAAGCTTACATCTCTAAATAAATTGATACTCAGTGAAAACCATATCACTGGTTTGATCCCTCACTCACTGGGCCTTTGTAAGGCTTTGCAGTTGCTTGACATAAGCAACAATAGGATCTCTGGGTCCATTCCTGATGAAATTGGTCACTTGCAAGAATTAGATATCCTCTTGAACTTTAGTTGGAATTCTTTAACAGGCCCCATCCCAGAAACCTTCTCGAACCTCTCAAAACTTTCCAACTTGGACCTTTCTCACAACATGCTCACAGGAAGCCTCGCAGTACTGGGTAGTCTTGACAATCTAGTGTCTCTTAATGTGTCCTACAACATTTTTTCTGGTTCTCTTCCTGATACAAAATTCTTCAAGGATCTCCCTCCTGCTGCATATGCTGGCAACCCTGACCTATGTATTAACAAGTGTCAAGTAAGAGAACATCACCAAGGCATCCAGTCAATAAGAAATATTATTATATGCACTTTCCTTGGTGTTATTTTAACTTCAGGGTTTGTCACTTTTGGAGTGATCTTAGCTCTCAGAATTCAAGGGGGTACTAACTTTGACAGTGAAATGCAATGGGCTTTTACTCCATTTCAAAAACTCAACTTCTCCATCAATGACATTGTCACAAAGTTATCAGATTCAAACATTGTAGGAAAGGGTTGCTCAGGAATCGTTTACCGCGTGGAGACTCCAATGAAACAGGTTGTTGCAGTGAAGAAACTATGGCCACCAAAGAATGATGAGTTACCCGAGAGAGATCTTTTTTCTGCAGAAGTGCATACCCTTGGATCAATAAGGCATAAAAATATAGTTAGACTTTTAGGATGCTACAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGTAATGGGAGTTTGTCTGGATTGCTCCATGAAAGTAGACTGTTCTTGGACTGGGATGCAAGATACAAGATCATACTGGGAGCAGCTCAGGGCTTAGAATATCTTCATCATGATTGTACTCCTCCAATCATTCATCGAGATATTAAGGCTAACAACATTTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTCGCAAAACTTGTAGGTTCCTCAGAATACTCAGGACCCTCGGCTATAGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTGTACAGTTTTGGTGTAGTGCTCATTGAGGTCTTAACAGGGATGGAGCCAATTGCTAACAGGATTCCGGAGGGTTCCCACATTGTCACTTGGGTTATCAGTGAAATCCGAGAGAAGAAAAGAGAATTTACATCAATTTTGGACCAGAAACTAGCATTGCAATGTGGAACACAAATCCCTGAGATGCTTCAAGTACTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCACATGAAAGACCATCAATGAAAGATGTCACAGCAATGCTCAAGGAGATTAGGCACGAAAATGTGGATTTAGACAAATCAAATTTTCTACATAAAGGAGGTGTCACAAATCCAAAAGCAGCGGTTCACTGTTCAAGCTTATCAAGATCTTGTGAACCTCTAACTGAATCACCATCTTCTTCGTAG 3243 0.4076 MSSNALTLLILVLNFSLFPATSAMNQEGVSLLSWLSTFNSSNSATSFSSWDPTHKNPCKWDYIKCSKEGLVSEIIITSLDLGTSFPIQLLSFGNLTTLVISKANLTGEIPGAVGNLSSLVTLDLSCNALSGTIPTEIGKLYKLKWLSLNSNSLHGGIPTQIGNCSKLQLLELFDNQLSGMIPGEIGLLRDLETLRAGGNPGIHGEIPMQISNCKALVYLGLADTGISGEIPPSIGELTSLKTLQIYTAHLTGHIPPEIQNCSALEELFLYENQLSGNIPNELGSLKSLRKVLLWQNNFTGTIPEGLGNCTNLKVIDFSLNSLVGELPVTLRSLISLEELLLSNNNISGEIPSYIGNFTSMKQLELDNNRFSGEIPPVLGQLKELTLFYAWQNQLHGSIPTQLSNCEKLQALDLSHNFLTGSIPRSLFHLENLTQLLLLSNRLSGPVPPDIGSCTSLIRLRLGSNNFTGQIPPEIGLLSSLSFLELSDNLLSGEIPSKIGNCAKLEMLDLHSNQLQGPIPSSLEFLAVLNVLDLSANRITGNIPENLGKLTSLNKLILSENHITGLIPHSLGLCKALQLLDISNNRISGSIPDEIGHLQELDILLNFSWNSLTGPIPETFSNLSKLSNLDLSHNMLTGSLAVLGSLDNLVSLNVSYNIFSGSLPDTKFFKDLPPAAYAGNPDLCINKCQVREHHQGIQSIRNIIICTFLGVILTSGFVTFGVILALRIQGGTNFDSEMQWAFTPFQKLNFSINDIVTKLSDSNIVGKGCSGIVYRVETPMKQVVAVKKLWPPKNDELPERDLFSAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSGLLHESRLFLDWDARYKIILGAAQGLEYLHHDCTPPIIHRDIKANNILVGPQFEAFLADFGLAKLVGSSEYSGPSAIVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLIEVLTGMEPIANRIPEGSHIVTWVISEIREKKREFTSILDQKLALQCGTQIPEMLQVLGVALLCVNPSPHERPSMKDVTAMLKEIRHENVDLDKSNFLHKGGVTNPKAAVHCSSLSRSCEPLTESPSSS* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1063 1080 SUPERFAMILY Protein kinase-like (PK-like) 738 1033 IPR011009 -
Apr1g1063 1080 SUPERFAMILY RNI-like 327 663 - -
Apr1g1063 1080 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Apr1g1063 1080 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Apr1g1063 1080 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Apr1g1063 1080 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Apr1g1063 1080 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Apr1g1063 1080 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Apr1g1063 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Apr1g1063 1080 PRINTS Leucine-rich repeat signature 408 421 - -
Apr1g1063 1080 PRINTS Leucine-rich repeat signature 622 635 - -
Apr1g1063 1080 SMART LRR_typ_2 116 139 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 573 597 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 525 548 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 549 572 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 405 429 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 477 501 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 285 309 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 622 645 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 140 164 IPR003591 -
Apr1g1063 1080 SMART LRR_typ_2 333 357 IPR003591 -
Apr1g1063 1080 Gene3D Transferase(Phosphotransferase) domain 1 837 1052 - -
Apr1g1063 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1054 - -
Apr1g1063 1080 Gene3D Ribonuclease Inhibitor 402 693 IPR032675 -
Apr1g1063 1080 SMART serkin_6 758 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1063 1080 Gene3D Ribonuclease Inhibitor 185 400 IPR032675 -
Apr1g1063 1080 Gene3D Phosphorylase Kinase; domain 1 730 836 - -
Apr1g1063 1080 SUPERFAMILY RNI-like 86 419 - -
Apr1g1063 1080 PANTHER LRR RECEPTOR-LIKE KINASE 3 1054 - -
Apr1g1063 1080 Pfam Leucine Rich Repeat 596 622 IPR001611 GO:0005515
Apr1g1063 1080 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Apr1g1063 1080 Pfam Protein kinase domain 761 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1063 1080 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Apr1g1063 1080 ProSiteProfiles Protein kinase domain profile. 758 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1063 Apr-Chr1 18638388 18642292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1063 23 1064 Receptor kinase-like Gene Family AT5G56040 47.393 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr1g1063 Pkinase 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1063 - - gmx:100814382 1828.14