Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1054 ATGGCCAACAAGCTGGGCCTCTTGTTCATTTACTCTGCAGCCTTCATCATTGGAGCAATGTTCTTTGGTGTTGGAGCTGAACCAGCGGAAGATAAACAAGCTTTGCTTGATTTCCTTCACAACATTAATCACTCTCATTATCTCAACTGGGATAAGAGCTCTTCTGTATGCAAAAGCTGGAGAGGAGTAATTTGCAACATTGACCAATCCAGAGTTATAGCCCTCCAACTATCCAAAGCTGGATTGAGTGGTCCAATCCCAGCCAACACTCTCAGTCTTCTCTCAGCACTCCAAACTGTGAATCTTACATCAAATAACATAACTGGTTCTTTCCCTTCTGATTTCTCTCAGCTGAAAAATTTGACCTATCTCTACCTCCAATTCAACAAAATTTCTGGTCCATTGCCATCAGATTTTTCAGTTTGGAAAAATCTTACTGTTGCCAATTTATCCAACAATTCTTTCAATGGGAGCATCCCATTTTCAATTTCAAATTTGACTCATCTCACTTCTTTAGTCCTAGCCAACAACTCTCTTTCAGGTGCGACTCCTGATCTCAATATTCCTAGCCTGCAAGACCTGAATTTGGCCAACAATAACCTTAGTGGAGTTGTGCCTAAATCTCTTCAGAGATTTCCAAGTTGGGTCTTTTCTGGTAACAATCTTATAACTGCATATGCACTTCCTCCTACTTCTCAACCACCAAATCATCATCGTACAAGACAAAGAGCCAAAAGACTCAGAGAACCAGCATTACTGGGAATCATCATTGGTGGTTGTGTGCTAGCATTTACAGCGATAGCAGCTTTTGTAATTGTGTGCCGGTACGAGAAACACAGTGGTGAAAATGGACAAGTGAAGTATCAGAAAAGAGAAGTCTCTACGAAAAATGAAGCTTCTGAAAGTCGAGACAAAAACAAAATAGTCTTCTTTGAGGGTTGCAATCTTGCATTTGACTTGGAGGACCTGTTGAGAGCATCTGCTGAGGTACTTGGAAAGGGAACATTTGGCACAGTATATAAGGCTGCTATAGAAGATGCAACCACGGTGGCAGTGAAGAGGTTGAAGGATGTTACGGTTGGAAAACGCGAGTTTGAGCAGCAGATGGAGATTGTAGGGAGGATAAGGCATCACAATGTGGCTGCACTAAGAGCATATTACTATTCAAAGGAGGAGAAACTCATGGTATATGATTACTACGAACAGGGAAGTGTCTCAGCAATGTTGCATGGCAGAAGAGGGGAAGGTAGAATTTCTTTAGACTGGGATAGCCGATTGAAAATAGCAATTGGTGCAGCAAGAGGCATTGCTCACCTCCATGCTCAACATGGAGGGAAACTCATTCATGGAAACATAAAATCCTCAAACATTTTCCTCAACCATCAAGGATATGGTTGTGTATGTGACATTGGTCTTGCCACATTGATGAGTCAAACACCTCCACCAGCATTGAGGGCTGCAGGATACCGTGCGCTGGAAGTAACCGACATGCGAAAAGCAACGCCTGCATCCGATGTATACAGTTTTGGGGTCTTGCTACTTGAACTTCTAACTGGAAGATCTCCATTTTATGCCAAAGGAGGTGAAGAGGTTGTTCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAGGTGTTTGATGTTGAGTTACTAAGGTATCCTAATATAGAGGAAGAAATGGTTGAAATGCTACAAATAGGAATGGCATGTGTTGTTAGAACACCAGATAAGAGGCCCAAAATGGTTGAGGTGGTGAGAATGGTGGAGGAAATTCGTAGAGTAAATGCTGAAAACCGATCATCCACTGAATCTAGATCAGAAGGTTCTACTCCTACCCCTCCTGCAATTGGGACACCTTCTACTTCTTTTCCACTATGA 1893 0.4247 MANKLGLLFIYSAAFIIGAMFFGVGAEPAEDKQALLDFLHNINHSHYLNWDKSSSVCKSWRGVICNIDQSRVIALQLSKAGLSGPIPANTLSLLSALQTVNLTSNNITGSFPSDFSQLKNLTYLYLQFNKISGPLPSDFSVWKNLTVANLSNNSFNGSIPFSISNLTHLTSLVLANNSLSGATPDLNIPSLQDLNLANNNLSGVVPKSLQRFPSWVFSGNNLITAYALPPTSQPPNHHRTRQRAKRLREPALLGIIIGGCVLAFTAIAAFVIVCRYEKHSGENGQVKYQKREVSTKNEASESRDKNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAAIEDATTVAVKRLKDVTVGKREFEQQMEIVGRIRHHNVAALRAYYYSKEEKLMVYDYYEQGSVSAMLHGRRGEGRISLDWDSRLKIAIGAARGIAHLHAQHGGKLIHGNIKSSNIFLNHQGYGCVCDIGLATLMSQTPPPALRAAGYRALEVTDMRKATPASDVYSFGVLLLELLTGRSPFYAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTPDKRPKMVEVVRMVEEIRRVNAENRSSTESRSEGSTPTPPAIGTPSTSFPL* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1054 630 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
Apr1g1054 630 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Apr1g1054 630 Pfam Protein kinase domain 328 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1054 630 MobiDBLite consensus disorder prediction 606 630 - -
Apr1g1054 630 PANTHER OS05G0588300 PROTEIN 14 622 - -
Apr1g1054 630 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Apr1g1054 630 MobiDBLite consensus disorder prediction 600 630 - -
Apr1g1054 630 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Apr1g1054 630 PANTHER LRR RECEPTOR-LIKE KINASE 14 622 - -
Apr1g1054 630 Gene3D Ribonuclease Inhibitor 140 227 IPR032675 -
Apr1g1054 630 SUPERFAMILY L domain-like 41 214 - -
Apr1g1054 630 Pfam Leucine rich repeat 88 131 IPR001611 GO:0005515
Apr1g1054 630 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1054 630 SUPERFAMILY Protein kinase-like (PK-like) 329 594 IPR011009 -
Apr1g1054 630 Gene3D Transferase(Phosphotransferase) domain 1 400 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1054 Apr-Chr1 18431805 18434870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1054 20 621 Receptor kinase-like Gene Family AT4G23740 55.556 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr1g1054 Pkinase 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1054 - - aprc:113851984 1243.41