Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1046 ATGGAAACCCAGAAGCTTCCAATGGATGACATTTTCAAAGACACAGAGTTTGGGGATACCCACTTTGGTGGAGACGATCTCTTTGCCATTTTGGAGAGCCTAGAAGAAGACTTTAACGATTTTCCTCTCGTCAACCGCACTTCTGAAGCTGTTATTAGCCCAACTTCAAAACAAAATGAGCAAAACTCAAGATTGGTGTCCCAAAAGTCAACAACATCTTCATGTGCTCCACATGATTCTGAAACTGAACCCGAAATCTCACCCAAAAGTAAGAGACAGAAATTTGCCCCTACCTTGCCTGAGGAACCGCAGAGGACGTCTCATATTACTGTGGAGCGCAACCGAAGAAAGCAAATGAATGAACATTTGTCTGTGTTGAGGTCTCTTATGCCTTCCTTTTATGTCAAACGAGGAGACCAAGCATCAATAATTGGAGGTGTTGTTGATTACATCAATGAGTTGCAGCAAGTGCTACAATGCCTAGAGGCCAAAAAACATAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGTCCAAGGCCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAGCCTGCCCATTAGTCCAAGAACTCCACAACCAGGTAGCCCTTACAAGCCCAGGTTGCAGCAAGGGTACCTTTCCCCTACCATATCCCACTCTCCTACTTCTTCCGCTTCTTCTTCCATCAACGATAATATCAACGAGCTTGTTGCCAATTCCAAGTCCGTTATCGCTGATGTTGAGGTCAAGTTTTCAGGTCCACACGTTCTTTTGAAGACTGTGTCACCACGAATTCCAGGGCAGGCTCTGAGAATAATATCAGCACTTGAAGACCTAGCGCTTGAAATCCTCCATGTGAACATTAGCACGGCTGATGAAACCATGCTTAACTCGTTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTTGCTCAGCAAGTTCAACAAACATTCTGCTAA 999 0.4414 METQKLPMDDIFKDTEFGDTHFGGDDLFAILESLEEDFNDFPLVNRTSEAVISPTSKQNEQNSRLVSQKSTTSSCAPHDSETEPEISPKSKRQKFAPTLPEEPQRTSHITVERNRRKQMNEHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQVLQCLEAKKHRKVYSDVLSPRLVSSPRPSPLSPRKPPLSPRISLPISPRTPQPGSPYKPRLQQGYLSPTISHSPTSSASSSINDNINELVANSKSVIADVEVKFSGPHVLLKTVSPRIPGQALRIISALEDLALEILHVNISTADETMLNSFTIKIGIECQLSAEELAQQVQQTFC* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1046 332 MobiDBLite consensus disorder prediction 182 211 - -
Apr1g1046 332 Gene3D - 99 168 IPR036638 GO:0046983
Apr1g1046 332 Pfam Helix-loop-helix DNA-binding domain 104 155 IPR011598 GO:0046983
Apr1g1046 332 MobiDBLite consensus disorder prediction 52 80 - -
Apr1g1046 332 MobiDBLite consensus disorder prediction 218 237 - -
Apr1g1046 332 SMART finulus 109 160 IPR011598 GO:0046983
Apr1g1046 332 PANTHER - 14 332 - -
Apr1g1046 332 MobiDBLite consensus disorder prediction 176 237 - -
Apr1g1046 332 MobiDBLite consensus disorder prediction 82 98 - -
Apr1g1046 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 174 IPR036638 GO:0046983
Apr1g1046 332 MobiDBLite consensus disorder prediction 52 106 - -
Apr1g1046 332 CDD bHLH_AtFAMA_like 107 177 - -
Apr1g1046 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983
Apr1g1046 332 PANTHER TRANSCRIPTION FACTOR FAMA 14 332 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1046 Apr-Chr1 18173394 18176202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1046 10 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.700 1.59e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g1046 HLH 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1046 K20558 - gmx:100809717 459.529