Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1045 ATGGGAGATTGGAATTACAAAAACCTTATACATGAGCTATTACAAGGCATGGAGTTGACAAGGCAGCTTCAAATCTCACTCCACATGTCTTCTGCGTCCCTAGAAAGCCGTGACCTTTTGATCCACAAGATCATAGCCACATTTGAGAGGGCAGTTAAAATGTTGAACAAGAGAACGGGGTTAGTGGGTGAGCCTTCATATTTGGCCACAAGGGTTGCAATCCGAATGTCAGAGTCACCACCTTTGAGTGTAAGTCCTAGTGAAGACTCAAACAAAGATCAGAGAGACCTCGACCAGAGTTTTTACAAAAAGAGGAAAACTGTACCAAGCTGGACAAAAAAGATTCGAGTTAACCCAGGGATGGGAGTGGAAGGACCCCTTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATACTTGGATCCAAGTATCCAAGAGGCTATTATAGATGCACCCACAGAAATGTTCAAGGATGCATGGCCACAAAGCAAGTGCAAAGATGTGATGAAGACCCAACTGTATTTGAAATCTGTTACCGGGGAAATCACACTTGCACAATGTCTCCCTATGCAGTTGCTCCATCAGGACCACAAGAAAGCCAAGAACCAAATATGACCACAGGTCCACAGCACCAAAGTGTTGACCAGCAATCAAGTGACCTACTTCTGAACCTCCGTGAAGGCCTGAGAGTCCTAACAGAGAACCTTGATCATGCCTCTAACAAACCATTTGATTCATTATTTCATCATTTCCCTTCAACCTCAAATATAAAAACTGAAGATCAAGTTTTCCCTTCTCCGGCCACTGAAAACAACTTTACTTATCCTTCTCATGTGTCCCCTGCCACATCTGGAACAACCTACTTTTCAGTTTCTCCAAGTAGTGGAAATAGCTTTAAGGGGCACCCAAATTTGGCAAGTTCTGGGTTTGAGATCAATGACATGATCTCAGCATCTACTTCTGCTGCAAACTCTCCAACCGTTGGCTTAGAGTTTCGATTTGATCAGTTTAATATATTATTAGACAGCCAAAACTTTTCCTTCGATAACCCACCATTCTCCTAA 1071 0.4276 MGDWNYKNLIHELLQGMELTRQLQISLHMSSASLESRDLLIHKIIATFERAVKMLNKRTGLVGEPSYLATRVAIRMSESPPLSVSPSEDSNKDQRDLDQSFYKKRKTVPSWTKKIRVNPGMGVEGPLDDGYSWRKYGQKDILGSKYPRGYYRCTHRNVQGCMATKQVQRCDEDPTVFEICYRGNHTCTMSPYAVAPSGPQESQEPNMTTGPQHQSVDQQSSDLLLNLREGLRVLTENLDHASNKPFDSLFHHFPSTSNIKTEDQVFPSPATENNFTYPSHVSPATSGTTYFSVSPSSGNSFKGHPNLASSGFEINDMISASTSAANSPTVGLEFRFDQFNILLDSQNFSFDNPPFS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1045 356 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g1045 356 Gene3D WRKY domain 121 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g1045 356 Coils Coil 224 244 - -
Apr1g1045 356 ProSiteProfiles WRKY domain profile. 122 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g1045 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 353 IPR044810 GO:0003700
Apr1g1045 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 353 - -
Apr1g1045 356 Pfam WRKY DNA -binding domain 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g1045 356 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g1045 356 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1045 Apr-Chr1 18157499 18159342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1045 1 243 WRKY Transcription Factor Family AT4G23810 36.397 6.90e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g1045 WRKY 5.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1045 - - gmx:100776906 400.979