Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1040 ATGGAATGCAACAAAGATGAGGCAGCTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGTAAGGGAATATGCTGGTTCAAAAAAGTTTGCTCTCAAGGCTTTAAATTTGTATCCTGCACTGGAGGGTCTTTCCCAGTTTCTTACAACTCTTGAGGTTTATATTTCTGCTGAGAATAAAATAAATGGAGAAATGGATTGGTATGGTATACTTGGAGTGAATCCCTTTGCTGATGAAGACACAGTTAGGAAACAGTACAGAAAGCTGGTTCTCACTCTTCACCCTGACAAAAACAAGTCTATTGGTGCAGAGGGTGCATTTAAGCTTGTTTCAGAGGCATGGAGTTTACTATCAGATAAGGTCAAGAGAATAGCATATAACCAGAAAAGGAGTTCAGAAGGATTTCAGCACAATACTCCCAAGCATGTTGGATCTCAATCAGAAGCATGCAGTTCGAATGGATTTTGCAAACCTAACAAGAATTCAACTTCAAGTGCTCAAACCGGAAATAATAATGCACAGGCACATCCATCCTCCATCCCTCCACATAAAAAGGCTGCTACTTTTTGGACTATCTGTAATCAGTGCAGAACACATTACGAGTATCTCAGGATTTATTTGAATCATACCCTTTTATGTCCCAGTTGCAATGAAGCTTTTGTGGCTATAGAGAAGGGTCCACCTCTCAATGTTGTTAAGTCATCTAAATGGTCTTCCGGGCAGCATCCTCAGAAGTCTTCTTCTCAGCAACATTCCAGTGCTGGAAGGAATCACTCTGTGAATCCAGGAAGAACTAGTGCATTTTTTCAAAATTTACAATCCAGTTCTAGATGCACGACTTCTTTAAATAATGCAAACTTCCAGTGGGGTTCTCACTCTAGAATGGCAGGTTTTTTTAGCACAGATGGACCATCATCTGTTGCTACTGCAAGTGTTAAGCAGCACTCAAGTGAGATAAGAAGAGAATGCAACAAAGTCCCATCAACTGCTGCATGGAAGAGGAATCATATGTCTAAGAGGTCTGATGGTTCTTTTAGTAACATTGAAAAACCTGTTAAGAAAATAAGGACAGATGATATTCACATGTACATGGCAAATCATATGACCATGAAAGATGGATCAAACAGTTTGGGACGGTTTTATGAATCGGGAAAAGCTGACATGGGAACAGAAAGGAATCATGGTTTTTCAGGAATGAGTAGCAAGCATTACAGCACGAGAGAGATGTCATTGTTTGAATTACGAAACATGTTGATTGATAAGGCACTGACTGAAATTGGCAAGAAACTTCAAGAATGGAGATCAATGCCTGAAGCTAAGATTACAAATAAAGACAAAGGAAATAAGGGACAGAAAAGCACACTTAATGACAAAACAACTGGTCCAGATGGAGGTTCCACTATTAATGGTAACAGGCACGTAGACAGTGATTCAATTCCAGTCACGTCTGATGCTGCTGTAAAGGAGAACCAGTCCTATGTTATGATCCATGTTCCAGATCCTGATTTTCACAATTTTGACTTGGATAGAACTGAAAATTCCTTCGAGGAGGACCAGGTCTGGGCTTCTTACGATGATGATGACGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTTGACAAAGCCATTTAGAATGCGAATCAGTTGGCTTAACTCTCGAAGCAACACTGAATTGGGCCCAATAGATTGGATAGGTTCTGGTTTTTGCAAAACCTGCGGGGATTTCAGGATTGGCAGGCATGAAATAACTGAATCATTAAATTCCTTTTCACACAAGGTAAGGTGGACTAAAGGCACTAGAGGAGTTGTACGCATCTTTCCTGGAATGGGGCAAGTCTGGGCTCTCTATAGAAACTGGTCTCCTGATTGGAACGAAAATACTCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTTGAAGATTTCAATGAAGAGGAAGGAGTATCGGTGACGCCTCTTGTTAAGGTTGATGGTTTTAGGACTGTGTTTCACAGGCAGAGCCATGATCAAGTTAGGAAGATTCCTAAAGCGGAGTTGTTTCGCTTCTCTCATCAGGTTCCTAATTACTTGCTTACGGGGCAAGAAGCTCATAATGCTCTGAAGGGCTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGACCTCCATCAGACAACTGAAGCTAACGAGGCATTGGATAATGTTGGAAAATCAAAGGAAGACACTTTGGCGGATTCACCTGAAAAACATGCTTCTATTAAGGGAGAGAATGCTTCAAACCCTAGTAGGGTAGATATGTTAGACAAGGATGATAGTTGA 2313 0.4103 MECNKDEAARAKEIAERKFSVREYAGSKKFALKALNLYPALEGLSQFLTTLEVYISAENKINGEMDWYGILGVNPFADEDTVRKQYRKLVLTLHPDKNKSIGAEGAFKLVSEAWSLLSDKVKRIAYNQKRSSEGFQHNTPKHVGSQSEACSSNGFCKPNKNSTSSAQTGNNNAQAHPSSIPPHKKAATFWTICNQCRTHYEYLRIYLNHTLLCPSCNEAFVAIEKGPPLNVVKSSKWSSGQHPQKSSSQQHSSAGRNHSVNPGRTSAFFQNLQSSSRCTTSLNNANFQWGSHSRMAGFFSTDGPSSVATASVKQHSSEIRRECNKVPSTAAWKRNHMSKRSDGSFSNIEKPVKKIRTDDIHMYMANHMTMKDGSNSLGRFYESGKADMGTERNHGFSGMSSKHYSTREMSLFELRNMLIDKALTEIGKKLQEWRSMPEAKITNKDKGNKGQKSTLNDKTTGPDGGSTINGNRHVDSDSIPVTSDAAVKENQSYVMIHVPDPDFHNFDLDRTENSFEEDQVWASYDDDDGMPRYYARIHKVILTKPFRMRISWLNSRSNTELGPIDWIGSGFCKTCGDFRIGRHEITESLNSFSHKVRWTKGTRGVVRIFPGMGQVWALYRNWSPDWNENTPDEVIHKYDMVEVLEDFNEEEGVSVTPLVKVDGFRTVFHRQSHDQVRKIPKAELFRFSHQVPNYLLTGQEAHNALKGCRELDPAATPLDLHQTTEANEALDNVGKSKEDTLADSPEKHASIKGENASNPSRVDMLDKDDS* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1040 770 MobiDBLite consensus disorder prediction 727 770 - -
Apr1g1040 770 SUPERFAMILY Chaperone J-domain 58 126 IPR036869 -
Apr1g1040 770 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Apr1g1040 770 MobiDBLite consensus disorder prediction 453 478 - -
Apr1g1040 770 PANTHER HEAT SHOCK PROTEIN-LIKE 1 739 - -
Apr1g1040 770 Pfam DnaJ domain 66 127 IPR001623 -
Apr1g1040 770 MobiDBLite consensus disorder prediction 161 178 - -
Apr1g1040 770 Pfam Domain of unknown function (DUF3444) 495 700 IPR024593 -
Apr1g1040 770 MobiDBLite consensus disorder prediction 438 452 - -
Apr1g1040 770 PANTHER BNAC03G44070D PROTEIN 1 739 - -
Apr1g1040 770 MobiDBLite consensus disorder prediction 233 265 - -
Apr1g1040 770 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Apr1g1040 770 SMART dnaj_3 65 122 IPR001623 -
Apr1g1040 770 CDD DnaJ 66 119 IPR001623 -
Apr1g1040 770 MobiDBLite consensus disorder prediction 438 478 - -
Apr1g1040 770 PRINTS DnaJ domain signature 68 86 IPR001623 -
Apr1g1040 770 PRINTS DnaJ domain signature 86 101 IPR001623 -
Apr1g1040 770 PRINTS DnaJ domain signature 102 122 IPR001623 -
Apr1g1040 770 MobiDBLite consensus disorder prediction 731 750 - -
Apr1g1040 770 MobiDBLite consensus disorder prediction 161 182 - -
Apr1g1040 770 Gene3D DnaJ domain 63 176 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1040 Apr-Chr1 17901809 17906021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1040 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.761 2.48e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1040 - - gmx:100799958 1184.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1040 1 17901809 17906021 Apr1g1040 1 17901809 17906021 ECH