Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1026 ATGATAATCAAGCGGAGCCTGAAATCCGAAATGCCGAGTCTGAAACGGCGCAGACTCGGCGACTCGCCGAGCGAGGGCGACGAGTCCGCGGCGGAGCGGAAGAAGAAGAAAAGAAAGACGAATGGTTATTGCTACCCTTTGAATCTCTTCGCCGGGGTAATTCCCGCTAGTTTTTCCGGCTTACTTGGCGCCGGCGCGGCTTCGGAGAAGAGCTGCAAAGTGGAGCCGAACTCCAAGGGCGACGAAGACAGAGGTGACAAGAAGAACGGTTCGCGGCCGGCGCTGGTGCGAACGTCGCGGGGGCGGGTTCAGGCGCTGCCGTCGCGGTTCAATGATTCGATAATTGAGGATTGGAGAAAGGATAGCAACAAAATTGCTACCGGCTATGATGATGAGGAGGTTGAGAGTGTGAAGAAATTGCCACAGAGAAAAGGGAAGAGCAATATCGGTCACAAGGGTCGGGGGTATTCTGCATTGTGTGAGGAGGTGCTGCATAAGAATTTTGATGCCAGAAAGGGGTTTGTGGAGTTGAGGGGCAATGAGGGTGTTTTGGAGACGAAGAAGAAGGATGGGTTGTATGGACCAGAAGACTTTTATGCTGGGGATATAGTGTGGGCCAAGGCAAGGAAGAAGGAGCCCTTTTGGCCTGCCATTGTCATTGATCCTATGTGTCAGGCACCTGAGCTTGTTTTGAAGTCCTGTATACCTGATGCTGCTTGTGTCATGTTTCTTGGCCACTCTGGGAGTGAAAATCATAGGGACTATGCATGGGTCAAGTATGGGATGATTTTTCCATTCATTGATCATGTAGACAGGTTTCAGGGACAGTCTGAATTGAGTTGCTGTAATCCTGCTGAGTTTCAAGCGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTTACAGAGAAGTTGATAACAGATATTAACACTGCAGCTGGTAACGCTGGTTGCGGTAATTTGATTCCGAAAGGCTTTCAGGAGGTCACTGGTTCAAACCAAAATGCAGCATGTCGCTTTCTGAATCAGAATTTATTTGATAAGAAGAAAGACATGCGACCTTGTGAAGTATGCGGATTGGAGCTTCCTTTCAAAATGTCAAAGAAAACGAAAGATTTGATTCCTGGCAGTGAATTCCTATGTAAAACATGTGCTAGGTTACCGAAATCAAAATATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCGGATAGCGGAAGTTGGGCTTGCTGCGATGGATGTAAAGTATGGGTGCATGCAGAATGCGACAAAATTTACGGCAAACTTTTCAAGACTCTGGGAGGCACTGATTATTTCTGCCCTACATGCAAAGTGAAGTTTGATTTTGAGTTATCCGATTCAGAAAAATCACAGTCAAAAGTGAAATTGAATGAAAGCAGGGGGAAACTATTGCTTCCGAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTTTGTGCAAGTGTGGTTTTTGCGAGAATAGGAAACAAGCACTTGGCGAATGGGAACACCACACTGGTTCCAAATATAGAAATTGGAGAACAAGTATTCGGGTGAAAGCATCCATGTTATCACTGGAAAAATGGATGCTACAATTGGCTGAGTTTCATGCTAATGCTGTAGCTTCTGTGAAACCTAAAAGGCCTTCCTTGAAAGAAAAGAAGCAGAAGTTGCTTACTCTTTTGCAAGAGAGGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATCATCATTTGCAACCGATGTCAAATAGCCGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACGTCATGGGTTTGTAAAGCTTGTGAAACGCCTGAGATCAAGCGGGAGTGTTGTCTTTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTGTTTTGAGTATTCCGTCAAATTCCTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCTCGGGCTGGTTATCGCATGGAGTTGCATTGTATGGAGAAGAATGGTAAACAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGAGCTCCCAATCCAGATACTGTTTTGATTATGCAAACCCCTCTTGGAGTCATTTCAACCAAAAGCCTTCTCCAAAATAAGAAGAAAGCTGGGTCAAGGTTAATTTCAGCTAACAGAATAAAGGTTGAAGACACTTCTCCTGCAGATAACACTGGACATGAGCCATTCTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAATCATGCAAAAAAGAGAACAGCAGATGAAGCCATTGCTCATCACGTAAGGGGTCACTACAATCATCCTTTAGATGCAATACGGAGTTTAAGTGCACACAGAGTGGTAGAAGAGCCCCAGGCATTTTCTTCTTTCAGAGAACGCCTTTATCATTTACAGAGAACTGAAAATGAACGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCGAAATATTCAAGAAGGAGAAATGGTTCTAGAATATCGGGGTGAACAAGTGAGGCGCAGCATTGCAGATCTAAGGGAGGCACAATATAGATTGGAAGGGAAAGACTGCTATCTTTTCAAGATAAGTGAAGAAGTGGTTGTAGATGCCACTGATAAAGGAAACATAGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGATGAGAGCCGGATTGCTCTCATTGCTAAGACTGATGTACCTGCTGGCGATGAGCTAACGTATGACTATTTGTTTGATCCTGATGAACCTGATGAATTTAAAGTCCCTTGTTTATGTAACGCTCCGAATTGCCGGAAATTCATGAATTAG 3063 0.4417 MIIKRSLKSEMPSLKRRRLGDSPSEGDESAAERKKKKRKTNGYCYPLNLFAGVIPASFSGLLGAGAASEKSCKVEPNSKGDEDRGDKKNGSRPALVRTSRGRVQALPSRFNDSIIEDWRKDSNKIATGYDDEEVESVKKLPQRKGKSNIGHKGRGYSALCEEVLHKNFDARKGFVELRGNEGVLETKKKDGLYGPEDFYAGDIVWAKARKKEPFWPAIVIDPMCQAPELVLKSCIPDAACVMFLGHSGSENHRDYAWVKYGMIFPFIDHVDRFQGQSELSCCNPAEFQAAIEEAFLADQGFTEKLITDINTAAGNAGCGNLIPKGFQEVTGSNQNAACRFLNQNLFDKKKDMRPCEVCGLELPFKMSKKTKDLIPGSEFLCKTCARLPKSKYYCGICKKIWNHSDSGSWACCDGCKVWVHAECDKIYGKLFKTLGGTDYFCPTCKVKFDFELSDSEKSQSKVKLNESRGKLLLPNKVTVLCNGVEGIYFPSLHLVLCKCGFCENRKQALGEWEHHTGSKYRNWRTSIRVKASMLSLEKWMLQLAEFHANAVASVKPKRPSLKEKKQKLLTLLQERYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGVLSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCMEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKAGSRLISANRIKVEDTSPADNTGHEPFSAARCRIFQRTNHAKKRTADEAIAHHVRGHYNHPLDAIRSLSAHRVVEEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREAQYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVPAGDELTYDYLFDPDEPDEFKVPCLCNAPNCRKFMN* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1026 1020 CDD SET_SETD1-like 865 1016 - -
Apr1g1026 1020 MobiDBLite consensus disorder prediction 1 38 - -
Apr1g1026 1020 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1020 - -
Apr1g1026 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 449 IPR013083 -
Apr1g1026 1020 SMART PostSET_3 1004 1020 IPR003616 -
Apr1g1026 1020 CDD ePHD_ATX3_4_5_like 642 753 IPR041955 -
Apr1g1026 1020 Pfam PHD-zinc-finger like domain 641 753 - -
Apr1g1026 1020 Pfam SET domain 889 994 IPR001214 GO:0005515
Apr1g1026 1020 PANTHER PHD FINGER PROTEINS 1 1020 - -
Apr1g1026 1020 SUPERFAMILY FYVE/PHD zinc finger 390 449 IPR011011 -
Apr1g1026 1020 ProSitePatterns Zinc finger PHD-type signature. 588 633 IPR019786 -
Apr1g1026 1020 SMART set_7 878 1001 IPR001214 GO:0005515
Apr1g1026 1020 Gene3D SET domain 792 1020 IPR046341 -
Apr1g1026 1020 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1020 IPR025780 -
Apr1g1026 1020 ProSiteProfiles Zinc finger PHD-type profile. 391 447 IPR019787 -
Apr1g1026 1020 SMART PHD_3 698 754 IPR001965 -
Apr1g1026 1020 SMART PHD_3 587 634 IPR001965 -
Apr1g1026 1020 SMART PHD_3 393 445 IPR001965 -
Apr1g1026 1020 MobiDBLite consensus disorder prediction 74 93 - -
Apr1g1026 1020 MobiDBLite consensus disorder prediction 1 35 - -
Apr1g1026 1020 SUPERFAMILY SET domain 871 1017 IPR046341 -
Apr1g1026 1020 Pfam PWWP domain 201 294 IPR000313 -
Apr1g1026 1020 Pfam PHD-finger 600 634 - -
Apr1g1026 1020 CDD PHD_TCF19_like 394 444 - -
Apr1g1026 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 756 IPR013083 -
Apr1g1026 1020 ProSiteProfiles SET domain profile. 878 995 IPR001214 GO:0005515
Apr1g1026 1020 ProSiteProfiles Extended PHD (ePHD) domain profile. 639 754 IPR034732 -
Apr1g1026 1020 CDD PHD_ATX3_4_5_like 587 633 IPR042011 -
Apr1g1026 1020 ProSiteProfiles PWWP domain profile. 200 269 IPR000313 -
Apr1g1026 1020 SUPERFAMILY Tudor/PWWP/MBT 193 297 - -
Apr1g1026 1020 Gene3D - 195 301 - -
Apr1g1026 1020 SUPERFAMILY FYVE/PHD zinc finger 586 650 IPR011011 -
Apr1g1026 1020 ProSiteProfiles Zinc finger PHD-type profile. 585 636 IPR019787 -
Apr1g1026 1020 MobiDBLite consensus disorder prediction 69 100 - -
Apr1g1026 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 636 IPR013083 -
Apr1g1026 1020 ProSiteProfiles Post-SET domain profile. 1004 1020 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1026 Apr-Chr1 17540934 17551397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1026 588 753 C2H2 Transcription Factor Family AT3G14740 33.333 9.73e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr1g1026 zf-HC5HC2H_2 3.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1026 - - gmx:100775276 1739.16