Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1022 ATGGGGTCTTATCACGCCTTTCCCTCACGGGTATACTTCCTAGTCGGCACCCAGGAGAATATTAGCCTTGCCAAGGTGGTCCTTGCTGATTTCCACCGGGATTCCACGTGGCCCCATGCTACTGGGTCGAGCGTAGCTAGTGATGCTTTCGCTACTGGACTGCTCGCATCTAGGGCTGCTTCCCATTTCGCTCGCGTAATAGGAATCGGCTTTTGCTTTCTTTTCCTCGGCTCTAAGATGTTTCGTTCGCCAGTGTTCTTTGCTGCCCGGATTCAGCAAGCAGTTCGAAAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATTACACCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAGCATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTAAAAAATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 570 0.4807 MGSYHAFPSRVYFLVGTQENISLAKVVLADFHRDSTWPHATGSSVASDAFATGLLASRAASHFARVIGIGFCFLFLGSKMFRSPVFFAARIQQAVRKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKNLPGVRYHIVRGTLDAVGVKDRQQGRSSAL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1022 189 Pfam Ribosomal protein S12/S23 98 184 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 93 188 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 PRINTS Ribosomal protein S12 signature 113 128 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 PRINTS Ribosomal protein S12 signature 129 148 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 PRINTS Ribosomal protein S12 signature 148 165 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 PRINTS Ribosomal protein S12 signature 165 181 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 PRINTS Ribosomal protein S12 signature 181 189 IPR006032 GO:0003735|GO:0005840|GO:0006412
Apr1g1022 189 Gene3D - 83 188 IPR012340 -
Apr1g1022 189 PANTHER 30S RIBOSOMAL PROTEIN S12-B 93 188 - -
Apr1g1022 189 TIGRFAM rpsL_bact: ribosomal protein uS12 94 186 IPR005679 GO:0003735|GO:0006412|GO:0015935
Apr1g1022 189 CDD Ribosomal_S12 110 181 IPR005679 GO:0003735|GO:0006412|GO:0015935
Apr1g1022 189 SUPERFAMILY Nucleic acid-binding proteins 105 186 IPR012340 -
Apr1g1022 189 ProSitePatterns Ribosomal protein S12 signature. 114 121 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1022 111 170 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 42.647 8.10e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1022 K02950 - twl:119992788 178.718