Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1013 ATGGGAAGGGGAAGGGTGCAATTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACCTTCTCAAAGAGGAGAACTGGTTTGCTCAAAAAAGCAAACGAGATCTCTGTACTTTGTGATGCTGAAGTGGCTCTTATAGTCTTCTCCACTAAAGGCAAACTATTTGAGTTCTCCAGCGATCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCGGAGAGGCAGCTTGTGACAAATAATCAGCCACAAAATGGAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAAAGGAATTTTATGGGAGAAGATTTGGATAGCCTAAGCATCAAAGAGCTTCAGAATTTGGAACATCAGCTTGATTCTGCTCTCAAACACATTAGATCGCGGAAGAATCAACTCATGTATGAATCTATTTCACAGCTTCATAAAAAGGATAAGGCCCTACAAGAACAAAACAACACGCTTGCTAAGAAGATAAAGGAGAAAGAGAAGACACTAGCTCAACAGGCACAAGAGCAGCAAAATAAGAATGTGGATCTTACTTCTGCTGTCCTTGTTCCTCAACCGTTGGAGACATTGAATATTGGAGGTTCGCCAGAAACTAGAGGTAACGGAGGAAATATTGATGGAACCTCAACTCCAGCCCAAGTTACCCTTCTTCCACCTTGGATGCTTGGTCCCACAAAGGAATAG 732 0.4194 MGRGRVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSTKGKLFEFSSDPCMERILERYERYSYAERQLVTNNQPQNGNWTLEHAKLKARLEVLQKNQRNFMGEDLDSLSIKELQNLEHQLDSALKHIRSRKNQLMYESISQLHKKDKALQEQNNTLAKKIKEKEKTLAQQAQEQQNKNVDLTSAVLVPQPLETLNIGGSPETRGNGGNIDGTSTPAQVTLLPPWMLGPTKE* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1013 243 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Apr1g1013 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 225 - -
Apr1g1013 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Apr1g1013 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1013 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Apr1g1013 243 MobiDBLite consensus disorder prediction 207 231 - -
Apr1g1013 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 Coils Coil 158 189 - -
Apr1g1013 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g1013 243 MobiDBLite consensus disorder prediction 206 243 - -
Apr1g1013 243 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr1g1013 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Apr1g1013 243 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1013 Apr-Chr1 16611095 16619346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1013 1 227 MADS-box Gene Family AT1G26310 57.661 2.92e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr1g1013 K-box 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1013 K09264 - gmx:100784742 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1013 1 16611095 16619346 Apr9g2935 9 36193783 36199560 ECH
Apr4g2561 4 34432099 34443163 Apr1g1013 1 16611095 16619346 ECH
Apr6g0286 6 2956873 2966322 Apr1g1013 1 16611095 16619346 ECH
Apr1g1013 1 16611095 16619346 Apr1g1013 1 16611095 16619346 ECH