Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1008 ATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAACTACTCAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCCGAGGCACGGATAAAAGATCCTGTTTATGGCTGTGTTGGGGCCATTTCAGTACTCCAAAGGCAAGTGATTAGGCTTCAGAAGGAATTAGATGCCACAAATGCTGATTTGATCCGCTATACCTGCAATGATATGCCAACTCAAGACGGGAGAAGGATGGGTGAAGGGGGAGGTTCGTCTCTTGGTCAATCGCCTGGTTACTATTATCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 489 0.4601 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNDMPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1008 162 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Apr1g1008 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 150 - -
Apr1g1008 162 Coils Coil 89 109 - -
Apr1g1008 162 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Apr1g1008 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1008 Apr-Chr1 16100337 16102028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1008 4 113 AS2 family AT3G27650 85.455 1.01e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr1g1008 LOB 8.7e-43 No_clan