Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0998 ATGGAAAGCATTCCACACCCAATTCCCAGAACAGTTGAGGAGGTTTTCACCGACTTTAAGGGTAGACGAGCGGGATTGATCAAAGCCCTCACTACTGACGTTGAAAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTGTATGGATTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGCATAAACTTTGCTAGGGACGGAATGCAAGAGAAAGACTGGCTATCACTGGTTGCAGTTCACAGTGATTCATGGCTGCTTGCAGTTGCTTTCTATTTTGGTGCCCGATTTGGATTTGGTAAGAATGAAAGGAAAAGACTTTTTCAGATGATAAATGATCTGCCAACTATCTTTGAAGTTGTCACAGGAAGTGCTAAGCTATCGAAGGATCAATTAGCTGCTCCCAACAATGGCAGCAAAAGCAAATCAAGTGGAAAGGTGTCCCGCCAATCTGAGTCTCAGACCAAGGGAATGAAGATGTCTGCACCACCCAAAGAAGAGGATGAAAGTGGAGAAGAGGAAGAAGATGATGATGAACAAGGTGCTACATGTGGGGCTTGCGGTGATAACTATGCCAATGATGAGTTCTGGATTTGTTGTGATATGTGTGAGAGATGGTTCCATGGCAAATGTGTTAAAATCACTCCTGCAAAGGCTGAGCACATCAAGCAATACAAGTGCCCAAGTTGCAGTAACAAGAGGGCCAGGGTTTAG 762 0.4475 MESIPHPIPRTVEEVFTDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKLSKDQLAAPNNGSKSKSSGKVSRQSESQTKGMKMSAPPKEEDESGEEEEDDDEQGATCGACGDNYANDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0998 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 252 IPR013083 -
Apr1g0998 253 MobiDBLite consensus disorder prediction 145 174 - -
Apr1g0998 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Apr1g0998 253 MobiDBLite consensus disorder prediction 183 197 - -
Apr1g0998 253 MobiDBLite consensus disorder prediction 145 197 - -
Apr1g0998 253 Pfam PHD-finger 200 249 IPR019787 -
Apr1g0998 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Apr1g0998 253 CDD PHD_AL_plant 200 249 IPR044104 -
Apr1g0998 253 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Apr1g0998 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Apr1g0998 253 SMART PHD_3 199 247 IPR001965 -
Apr1g0998 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Apr1g0998 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0998 Apr-Chr1 15556203 15561727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0998 1 250 Alfin-like Transcription Factor Family AT1G14510 82.400 1.13e-132 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr1g0998 Alfin 5.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0998 - - gmx:100807826 460.299