Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0996 ATGTATAATCAAGTGAATCGTGGTACTCATTTCGGACAGAGTTCTGTTCCTGCAGTGCCGCCACCACCACCACCACCACCGTATCAACAGGCTCTACCTCATTTCCATCAGTTCCCACCGCCACCCCCACCTAATGTTTATTTACATGGACCTACCCCTCCTACTTCGTCATCCCCGGTTCCCTTGAACCTTCCCATTCAAGGTTCACATAATGTGATGCCAAATGCAGGGCAATCCTATGTTATCCCTTCTCAATTGCACCATGGGAACACAGTGGCGCCACAAATGTCTTGGGCTCCCGGGCCACCAGCTAGAACGTTGCCACCTCCACCGCAGCCTCCCTCGGCTTCCCAAGGACAGATATTGTATAACCCTCCTTTCCATCCACCACCTCCGCAGCCCGGTGATGTTCAGAATATGCGTAGTGCTCCTCCGCCACCCCCCCCTTCAGTGTATCTCCATTCAACTGTTGGTAATTACCAGGTGCCCCCACCTTTGCCATCGTCTCCGCCTCCTGTTCCACCATCTCCTCCGCCTCTTACCCCTCCTATGACTTCTGTGTCCTCCCATGCTACACGTGCTGATGATGCAAAGATGTTTGGTTTGGAATTGAAGTCTGTGGATTCAGTTGATGGAGTTGTAGCTTCTCATACATCTGGTGTTGTGCCGGTGTGTAATTCTGATTCTAATTGGGATGGTGGAAGTTATAGAGAAGTTGCTGTTGCTGCAAGAGATGAGGATCTGCTCCCGCCCAAGCCAACAGAAGAAAAAACTGTGAAGAAGATTGAAGCTTTGTGTCAGCTTATAGCTGCAAATGGTGCTGATGTTGAAGATAAGACTCGTCGAGATGAATTTCGGAATCCTGAATATGCATTTTTGTTTGGTGGTGACCCAGGAAGTGAAGCTGCAATTTCTCACACATATTTCCTGTGGATGAAGAAGAAATATAATTTGGATACTGAATGGCATGAAAAGAAAAGGGAATCACCGATGGTAGACTCTTCAGGGAAACAGTATCATATGCACGTTGCAACTGTAAGTGCCGATTCTGACATGGAAATGGAAGATGATATCACACTTTCTGACAAAGGTCAAGGCTCAAATTATGCTACTGAAGCCCTAACTCAGCCACATAATCGGCTTGATGAGATGTTTAACATGAATCAGAATATACAGCAGCTGCAGAATTCAATAGCCAAGGACGTCTCATCCTGTGATGTTTCATACTTTGGATCCATAAGAGTCAGCAAACAAAATGAAGAACCAGGGATTTTATCTGATGTGGAGCACATGAAATCTGCAGGATCAGTTACCAAGGTCTGTAGTCCTGTGAATGACTCAACAAAGGTAGCTGAATTTCTCTTGGGCACTGTTTTGGAGAAATCTACAGCTCCTGGAGATAAAGATTTCATGCAAACTGGTATTTCTGATCATAAAGAAACCATTAATCCTGATAAAGATAGGCTACTCGTAAGGAGTGGCAGCCTAAAAAGACTTCTTCAAAATTATGCTTCTGATGATGCTTCAGATAATGAAGATGATGGCTGTGCCGCAGATGCTAATGTTTTCACAGTCTCAGGAGGTGCTGACATTGGTGTTTTGGCTGCCCATAAAGATTCTGGGATTTCTATGGAGACCAGTACTGGATCGAAGAATCCCTCTAGCACTCAAAAGGAGTTTAGGCCACCGTCCAAAACATCACGGGATGATCCAGGAACATCTCCATGTATAGTACAAGAGTCTAAGACCCGGAAAAGATATGTCTCACGTTGGACTAGTGATGAATGTATTGAGCATAACCTTGAAAATCAAGTGTCTGTTAATTTTGCTGCTTTGGTGGAATCTTTCCATGGCAAAGATGGATTAGAAGGTACTGGCATTGACTGTGGTAACAAGAGCACCAATGGTGAACTGGAGAATGAGGGGAAAACCTCAAAACATGAGCCAAATGTTCTGAAAGTTGATGAATTCGGAAGACATCTTAGAGAATGTCTTACGGACAGTGATTCTGATGACTCACGCAATCTTCAGACAAGGAAGATAAACAAAAGAGATAGAAGCTGGGGTCACAGCCAGTCTCCTCCTGACAGGAGGGGTAGGAGGAGGAGGAGGAGGAGGAGCCCCTGGAGGAGAAAGGATAAAAGAAACCGGTCTCGCAGCTGGTCGCCTCGGCAACATAGAAGCAGGAGCAGGTCTCCAATCTTAAGACTTTCAGGAGACTTTCGTGGTGAGAATGTGAAAAGGGACAAGGGTCAGTGCATGAACTTCTTTCGAGGAAAGTGCTATCGTGGAGCATCTTGCAAGTATGCTCACCATGAATCTGAAATAAATGCTACTTCAAAGCGCCATAGGAATAAACAGGATCTGGAAGTCCGATCTCATGCAAAGGAAGCCAGGATTAATGAGGGTATGGAGAATATTTCTTCTAAAGGGTCAGATTATGAGCATGGAGGAATCAGAAATCAGGATGTGAATCTTTGTAATAATTTAGCCAGCCATAAAGTAGTGCAGAAGAAAGAAGATTCAGGGAGGCATGCTGTTGTGTCTATTACTGCTTGTCTTGATGGTCAATCAGTTAATAATAGTGATCCAAGTAAATCTGAAGGTTTCAGAGAGGCTGCTCCTGAAATGCAGGAAACCATAGGAGTCATGGAGGAACCCAAGGCTTTATTAATCCATGAAAATGATAGATTTCAGAAAGCAGGGAATTCTCATCAGCGACACTTGGTTGATGGTTTTAACCCTGAAGCTTTAAGCAGTGGTGATGCTTCTAAAACATCTGGTACATATAAAGACGTCATTCCCTCAGAAGATGGTTTATTTGTTGTTCAGCAAATACAACCCAAAGTTTCTGTTGGTGTTCCAGAATATTCTGGTTACCCATCTCAGCTTATATATGCATCCTTTGTGACTGATTCATCACCTGATAAAAGATCAATTGTTTCTGCTACTGCTAATGAGGTTTATGGTAGTGAACCATTACCATATATGTTACCTTCAACTCAGGTACAGTCAGCCACTACTTCTGTTGGTCCATGTGTTGTCACATCAGAGAAGCCTTCATTGCACTCTGAGGCATCTAAAGAGTTACCTCCGCATAGTGGTTCTTCAGTGGAATTACTGCTTCATACTTACCAGTTGCCTTCTGTTGTTTCTCATTCTCAGGGTGAAAATACTGTACATATGCCACAAATTTCAAGGCAGCATGGTGGGATGCAACAAAGTGCATTCTTTCCTTTTCAATCCACTGCACGAGAAAAGTTTGAACCTTACCCAGCTCCATTACACACGCAGAATTCTCACTTCAGTGTAACACCTAATAGCACTTGGACATCATTGCCACCACCACCGCCACTACCACCGTCAAGAGCAATGTATAATTCCAGTTTAAACTCAGGAGTTGCAAAATCACATGTTTCTTCAGAATTCAATCAGAGTCAATTGCATTTGAGAACTGACTTTGTTTCTCAGACTCCCACGAAGCCTGGGTTACCAACTCATTCTCTGAATTCTGAGTTTCAGGATCAAGCATACCTTCCAATGCAGGATCATTCACGAACATTCATGCATACTGAACCTTTCTCTCCGAAGCATCTCCCCCAGGGGAACCCACCTAGTCAACTGCTTTCAGGTTCTAATATCAATAGAGAAGACCTTAATACTCCGCTTTCAATGCAGGATTCAAAATTTTCAAGCTACACATCATTTGGAGGCCTACATTCTCAATCCAAGCAATTTTCCTGGGAGTCAGATGTAAACAGACCACAACCTTCTCTGGGTGGCAGGTTGTCTCCTGAGGGACATTTTATGACATCTTCCCAGATTCATTCATTATCACAGAAGCAACAATCAATGTATAATTTTCAATGTCCTGCATCTGACGTTAATTTGGGTGTGCCTGGGGAGACTGTTACTGTATCCAGATATCCACCAGACTCTCTGGATAGCAATCATTCAACCTCTCTTCCAACTATTGGGGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTCAGTTCAAGTATTTATAGACAAGAAAGTGAAATAATCCATGGTAACAATTATGCTTCTTCTAGATTAAACCATACTCCTATAAATAGGACAGGTGATGGTGGGGTTGGATCAAGACAGTCAGCATCACCAAAATCAGCTAGAGGTTTTGGTCAGATTTTGCCTAGATCTGGCGGTGACCAATATGATCCACTTTTTGACAGCATTGAACCATCATCCTCTTTGAGAAAAAATGATTTTGATCAGAAGCAGGAAGTTACAGGTGAATCTAACATCAGCCTAAGGCCCAAAAGTTCTCATATGTCTTTGGACATGGATGAGAAAAACAAGCATGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATATGGTGAGACAGCAGATGCTGAAGTTGGTGTTGTTGAAAATGAGAGCCTAAGTAATGATGTGGATGTTGCAAAAATGACTACAGGGGACGTTGAGATTAATCAGATCAAGTCTCCAGGGAAAAGAAAGAAGAGTAAGGAATCCAGATCGATGAAATTGTTCAAAATTTCCATTGCAAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCAGCAAGGTAATATGAGTAAGGTGGCTTTCAAAACCATTGTGAAAAAGACTGTTGATAAGGTGTCAGGAGCCATGAAAGGTCATCGTGTACCCAAGTCTCAAGCAAAAATAAGTCAATATATTGACTCGTCTCAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTCGACAAGTATGTCAAGGTCTGA 4824 0.4299 MYNQVNRGTHFGQSSVPAVPPPPPPPPYQQALPHFHQFPPPPPPNVYLHGPTPPTSSSPVPLNLPIQGSHNVMPNAGQSYVIPSQLHHGNTVAPQMSWAPGPPARTLPPPPQPPSASQGQILYNPPFHPPPPQPGDVQNMRSAPPPPPPSVYLHSTVGNYQVPPPLPSSPPPVPPSPPPLTPPMTSVSSHATRADDAKMFGLELKSVDSVDGVVASHTSGVVPVCNSDSNWDGGSYREVAVAARDEDLLPPKPTEEKTVKKIEALCQLIAANGADVEDKTRRDEFRNPEYAFLFGGDPGSEAAISHTYFLWMKKKYNLDTEWHEKKRESPMVDSSGKQYHMHVATVSADSDMEMEDDITLSDKGQGSNYATEALTQPHNRLDEMFNMNQNIQQLQNSIAKDVSSCDVSYFGSIRVSKQNEEPGILSDVEHMKSAGSVTKVCSPVNDSTKVAEFLLGTVLEKSTAPGDKDFMQTGISDHKETINPDKDRLLVRSGSLKRLLQNYASDDASDNEDDGCAADANVFTVSGGADIGVLAAHKDSGISMETSTGSKNPSSTQKEFRPPSKTSRDDPGTSPCIVQESKTRKRYVSRWTSDECIEHNLENQVSVNFAALVESFHGKDGLEGTGIDCGNKSTNGELENEGKTSKHEPNVLKVDEFGRHLRECLTDSDSDDSRNLQTRKINKRDRSWGHSQSPPDRRGRRRRRRRSPWRRKDKRNRSRSWSPRQHRSRSRSPILRLSGDFRGENVKRDKGQCMNFFRGKCYRGASCKYAHHESEINATSKRHRNKQDLEVRSHAKEARINEGMENISSKGSDYEHGGIRNQDVNLCNNLASHKVVQKKEDSGRHAVVSITACLDGQSVNNSDPSKSEGFREAAPEMQETIGVMEEPKALLIHENDRFQKAGNSHQRHLVDGFNPEALSSGDASKTSGTYKDVIPSEDGLFVVQQIQPKVSVGVPEYSGYPSQLIYASFVTDSSPDKRSIVSATANEVYGSEPLPYMLPSTQVQSATTSVGPCVVTSEKPSLHSEASKELPPHSGSSVELLLHTYQLPSVVSHSQGENTVHMPQISRQHGGMQQSAFFPFQSTAREKFEPYPAPLHTQNSHFSVTPNSTWTSLPPPPPLPPSRAMYNSSLNSGVAKSHVSSEFNQSQLHLRTDFVSQTPTKPGLPTHSLNSEFQDQAYLPMQDHSRTFMHTEPFSPKHLPQGNPPSQLLSGSNINREDLNTPLSMQDSKFSSYTSFGGLHSQSKQFSWESDVNRPQPSLGGRLSPEGHFMTSSQIHSLSQKQQSMYNFQCPASDVNLGVPGETVTVSRYPPDSLDSNHSTSLPTIGGSRISAHYNPYASTFEKPLSSKFSSSIYRQESEIIHGNNYASSRLNHTPINRTGDGGVGSRQSASPKSARGFGQILPRSGGDQYDPLFDSIEPSSSLRKNDFDQKQEVTGESNISLRPKSSHMSLDMDEKNKHEEVGAVASTTSQNNDEYGETADAEVGVVENESLSNDVDVAKMTTGDVEINQIKSPGKRKKSKESRSMKLFKISIANFVKEVLKPSWQQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV* 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0996 1607 MobiDBLite consensus disorder prediction 1201 1219 - -
Apr1g0996 1607 PRINTS Proline rich extensin signature 17 33 - -
Apr1g0996 1607 PRINTS Proline rich extensin signature 42 54 - -
Apr1g0996 1607 PRINTS Proline rich extensin signature 98 114 - -
Apr1g0996 1607 PRINTS Proline rich extensin signature 122 139 - -
Apr1g0996 1607 PRINTS Proline rich extensin signature 163 188 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 91 188 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 101 116 - -
Apr1g0996 1607 Gene3D - 747 834 - -
Apr1g0996 1607 Gene3D Surp module 245 319 IPR035967 GO:0003723|GO:0006396
Apr1g0996 1607 ProSiteProfiles Zinc finger C3H1-type profile. 747 774 IPR000571 GO:0046872
Apr1g0996 1607 MobiDBLite consensus disorder prediction 1 77 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 696 731 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 668 695 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 1191 1219 - -
Apr1g0996 1607 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1607 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 124 152 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 542 580 - -
Apr1g0996 1607 PANTHER EXPRESSED PROTEIN 1 1607 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 668 743 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 620 651 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 163 184 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 1014 1035 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 542 581 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 1365 1450 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 16 60 - -
Apr1g0996 1607 MobiDBLite consensus disorder prediction 61 77 - -
Apr1g0996 1607 SUPERFAMILY Surp module (SWAP domain) 237 316 IPR035967 GO:0003723|GO:0006396
Apr1g0996 1607 MobiDBLite consensus disorder prediction 1365 1395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0996 Apr-Chr1 15334915 15342997 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g0996 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0996 - - gmx:102668322 2108.95