Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0979 ATGGCTTATTCACCGAGTCGAAGAAGGACTCATGCTCCCAAATCGTGGAAAAGCCTGAACGACGACGTCTCGTGCGAGGAATGTGGGTCGGGAGATTTTCCTGCGAAGTTGCTTCTCTGCGACAAATGCGACAAAGGGTTCCACCTCTTCTGCCTCAGACCCATTCTTCCCTCTGTCCCCAAAGGGTCTTGGTTCTGTTCCTATTGCTCCCACAAGCCCAAGTGTATTCCCCCTTTCACTCTTTTCCATTTCTCAACTTCATTCTCTTTCTTATTATTAACCCTCTCCCAATTTGCAGCTTTTCCTCTCGTCCAGACCAAAATCATTGACTTCTTCCGAATTCGACGCTCCTCGGATGCTCCTCAGATATCCAATCATGAATCGCGGAAGAAGCGAAAACGTGGTGGTAGCTTAGTGGTGTCGAAGAAGAAGAGGAAGCTGCTTCCTTTCACACCGAGTGAGGATTCCAAACGGAGATTGGAACAGATGGCATCGCTGGCAACGGCGCTCACTGCAACTAAAACGGAATTCAGCAACGATCTTACTTATATGCCTGGAATGGCTCCGAGGTCTGCTAATTCTCCTGCTCTCGAGCATGGTGGAATGCAGGTCTTGTCGAAAGAAGACACGGAGACCTTAAACTTATGCAGAAGTATGATGGAAAAAGGAGCATGGCCACCCCTCATGGTTGTTTATGATCCTCTAGAAGGGTTTACTGTAGAAGCAGATAGATTCATAAAAGATTTGACAATAATAACAGAATACGTTGGAGATGTAGACTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCACGAACGCTTGTTATCTGTCCAGATAAACGTAGCAACATAGCACGTTTCATTAACGGCATCAATAATCACACGCCAGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGGTTTGACGTGGGAGGTGAATGTCGGGTTCTTTTAATCGCTAATAGAGATATTACGAAGGGGGAAAGGTTGTACTATGATTACAATGGATACGAACACGAATATCCAACCCAACATTTTGTCTAA 1083 0.4469 MAYSPSRRRTHAPKSWKSLNDDVSCEECGSGDFPAKLLLCDKCDKGFHLFCLRPILPSVPKGSWFCSYCSHKPKCIPPFTLFHFSTSFSFLLLTLSQFAAFPLVQTKIIDFFRIRRSSDAPQISNHESRKKRKRGGSLVVSKKKRKLLPFTPSEDSKRRLEQMASLATALTATKTEFSNDLTYMPGMAPRSANSPALEHGGMQVLSKEDTETLNLCRSMMEKGAWPPLMVVYDPLEGFTVEADRFIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGYEHEYPTQHFV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0979 360 Gene3D SET domain 132 360 IPR046341 -
Apr1g0979 360 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Apr1g0979 360 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Apr1g0979 360 Pfam PHD-finger 25 71 IPR019787 -
Apr1g0979 360 Pfam SET domain 46 348 IPR001214 GO:0005515
Apr1g0979 360 CDD PHD_RSF1 25 69 - -
Apr1g0979 360 SMART PHD_3 24 70 IPR001965 -
Apr1g0979 360 PANTHER HISTONE ACETYLTRANSFERASE 10 357 - -
Apr1g0979 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 74 IPR013083 -
Apr1g0979 360 ProSiteProfiles SET domain profile. 226 348 IPR001214 GO:0005515
Apr1g0979 360 CDD SET_ATXR5_6-like 223 360 - -
Apr1g0979 360 SUPERFAMILY SET domain 218 348 IPR046341 -
Apr1g0979 360 SUPERFAMILY FYVE/PHD zinc finger 15 79 IPR011011 -
Apr1g0979 360 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 10 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0979 Apr-Chr1 14817160 14819752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0979 10 72 PHD Transcription Factor Family AT2G36720 41.270 3.21e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr1g0979 SET 6.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0979 K24406 - gmx:100775247 568.54