Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0974 ATGGCCATGGCTGCTGCTCTGCGTCGCGAAGGGAGGCGTTTGGCCCATCCCATCAACGCTCTCAATTCTTCTCTCATTTCTCCAGACCTTGCTCCCAATGGGGCGCGTTCTATTTCCACTCAAATAGTGAGAAACCGAATGAAGAGTGTGAAGAATATCCAGAAGATCACCAAGGCAATGAAGATGGTTGCCGCTTCAAAGCTACGTGCTGTTCAAACCAGAGCCGAAAATTCACGTGGCCTCTGGCAACCATTCACCGCTCTTCTAGGTGACAATCCCGGTGCTTCTGTCAAGAAGAGCGTTGTTGTTACTGTTTCTTCTGACAAAGGTCTTTGCGGTGGGATTAATTCCACATCCGTCAAGATAAGCAGGGCTTTGCACAAGTTGAATTCTGGGCCTGATAAGGAGACAAAATATGTCATATTGGGAGAGAAGGCTAAGGCTCAATTGGTCCGTGACTCAAAGAAAGACATTGAGCTCTGCCTAGCTGAATTGCAGAAAAACCCCCTGAATTATACTCAGGTGTCTGTATTGGCAGATGACATTCTAAAGAACGTGGAGTATGATGCATTAAGGATTGTCTTCAACAAATTTCATTCGGTTGTCTCATTTGTGCCAACAGTGTCAACTGTACTATCTCCTGAGGTTATTGAGAGAGAGGCTGAATCTGGAGGAAAGCTTGGGGAGCTGGATTCCTATGAAATTGAAGGTGGTGAGACAAAATCAGAAATTCTTCAGAATCTGGCCGAGTTTCAGTTTTCATGTACCATGTACAATGCGGTGCTGGAGAATGCTTGCAGTGAACAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAACGCTGGGGAGATGCTTGATCGTCTCACCCTCACGTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGACTGAGATTATCTCTGGAGCTTCAGCACTGGCAGGTTAA 957 0.4639 MAMAAALRREGRRLAHPINALNSSLISPDLAPNGARSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPGASVKKSVVVTVSSDKGLCGGINSTSVKISRALHKLNSGPDKETKYVILGEKAKAQLVRDSKKDIELCLAELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVSFVPTVSTVLSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQFSCTMYNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELTEIISGASALAG* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0974 318 PRINTS ATP synthase gamma subunit signature 97 116 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 PRINTS ATP synthase gamma subunit signature 263 282 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 PRINTS ATP synthase gamma subunit signature 294 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 39 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 PIRSF ATP_synthase_gamma 6 316 - -
Apr1g0974 318 ProSitePatterns ATP synthase gamma subunit signature. 302 315 IPR023632 -
Apr1g0974 318 PANTHER BNAA05G10580D PROTEIN 1 316 - -
Apr1g0974 318 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 41 316 IPR035968 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 CDD F1-ATPase_gamma 39 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 Pfam ATP synthase 41 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 Gene3D - 63 275 - -
Apr1g0974 318 PANTHER ATP SYNTHASE GAMMA CHAIN 1 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr1g0974 318 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 313 - -
Apr1g0974 318 Hamap ATP synthase gamma chain [atpG]. 37 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0974 Apr-Chr1 14663208 14677095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0974 16 316 Primary Pumps ATPases AT1G15700 30.508 1.64e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0974 K02136 - gmx:100813657 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0974 1 14663208 14677095 Apr1g0974 1 14663208 14677095 ECH