Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g0962 | ATGATCAATCCAATGGAAGAAGACCAAGAAGTGAAGCACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGAAGATCCTTGGGAGGCCACATGAGGTCACATGTCACCAATGCTTCAACTGAGAATGAAGAGAAGGTTTCAGCACCAACAATAAGGAAGCTTTCATCTTTCAACAGCAATGGTGGAGACACTTGTGAAGCAGGAGTTAACAATGGAGGGTATGGTCTGAGAGAGAACCCCAAGAAGACTTGGAGGTTCACGGATTCAAGTGAAGACACTGCGGTGTTGGACAAGTTTTGCAAAGAGTGTGGCAAAGGATTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGATAGGGAAAGAGTGACCCAAAATAACACCTTTTTGGATGATCAAGATTCGTGGACTAATAATAACAACAATGGTAGTCACAAGATGGTGTTGGAATTGGAAAGCCAATCTGAAAATGAAGCCAGTGCTCCAAATCGAAGGAGAAGATCCAAGAGAAGAAGAACAAGGTACATGGACCCATCAACCTCTTCTATTTCTTTTGTTTCTGAGGCTGAGCAGGAGCAGGAAGAAGTTGCTATGAGCTTGATGATGCTTAGCAGGGATTTGAGTCCTTGGTGTGGTTTGAATTCTGTTGCCGAGTCCTCTGGCAATAACTCAATGCACTTTGAATTGGAAGGTCCATCTTTGGTTCCAAAGGTTGAGGGCAAGAGGGTTATCTCCAGTGGTTCTGAGATGGCTAAAAAAGTGACCAAGCCAAGGGACATGAAGTGGGAGTTTGGCAATTCTGCTGCTTCAAATCTCAACTCCAAAGGTAAAAAGAGTTCAGAGCTTTTGGCTACTGAGTGTCCTGAAAATGGATTTGGGGTCAACAAGACCAAGGATATTGGAAATGAGTTCATCAGGAATGGGAAGGATAAGAAGCCTGAGCTTGAGCTTGATTCTCAGTTTGAATTTGAGGACAATGGAACAGAATTCAGTAATAGTAAATACACTTCAATCAAGGCAAAGCTTTTGGATTCTGAGATGAAGTCAAGTTCTTTGAAGAGTTGGGCAAACAAGACTTCAGAAGCTGAATTTAGCAAGAGCTCCCACAAGAGAGGCAAGTTTGAATGTACTACTTGCAACAAAATCTTTCAATCATACCAAGCACTTGGAGGTCACAGAGCTAGTCATAAGAAGATCAAAGGTTGCTTTGCTTCAAAAAATGCGAGCAGTGAAAACAGCACTGAATTGGAAGCAGACCTCTCCCCTGACCCAACAACAGAAAGTAAGCTCATGAAGAACAATAATACTATTGACAACAATGAAAATGTGGAAGAACATGAAATGGTTACTACTATTGGTTTTGACAATGAGGAAGACACAGTGAGAGGGTCCAAGAAGAGCAAAGGGCATGAGTGTCCAATTTGCCTCAAAGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATTTGGCTGGTGGGTCTGAGAGTACTAGAAACTGTCAAAGTCAAACAATTGTACTTGAGGAAGCAACCCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGACAGCAATAGCCATAACCATGCTGAGCCTTACAGAACTTGGTGGGTAGTAGGAGGGAACAACAAGCAGGAGGCACTGGTGGGCCTCATGTCTAACTAA | 1704 | 0.4331 | MINPMEEDQEVKHVCKFCSKSFPCGRSLGGHMRSHVTNASTENEEKVSAPTIRKLSSFNSNGGDTCEAGVNNGGYGLRENPKKTWRFTDSSEDTAVLDKFCKECGKGFHSWKALFGHMKCHSDRERVTQNNTFLDDQDSWTNNNNNGSHKMVLELESQSENEASAPNRRRRSKRRRTRYMDPSTSSISFVSEAEQEQEEVAMSLMMLSRDLSPWCGLNSVAESSGNNSMHFELEGPSLVPKVEGKRVISSGSEMAKKVTKPRDMKWEFGNSAASNLNSKGKKSSELLATECPENGFGVNKTKDIGNEFIRNGKDKKPELELDSQFEFEDNGTEFSNSKYTSIKAKLLDSEMKSSSLKSWANKTSEAEFSKSSHKRGKFECTTCNKIFQSYQALGGHRASHKKIKGCFASKNASSENSTELEADLSPDPTTESKLMKNNNTIDNNENVEEHEMVTTIGFDNEEDTVRGSKKSKGHECPICLKVFPSGQALGGHKRSHLAGGSESTRNCQSQTIVLEEATPEIRDFFDLNLPASTEEDSNSHNHAEPYRTWWVVGGNNKQEALVGLMSN* | 568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g0962 | 567 | Coils | Coil | 561 | 567 | - | - | |
| Apr1g0962 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 101 | 121 | IPR013087 | - | |
| Apr1g0962 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 476 | 496 | IPR013087 | - | |
| Apr1g0962 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 99 | 126 | IPR013087 | - | |
| Apr1g0962 | 567 | SUPERFAMILY | beta-beta-alpha zinc fingers | 13 | 121 | IPR036236 | - | |
| Apr1g0962 | 567 | Pfam | C2H2-type zinc finger | 378 | 402 | - | - | |
| Apr1g0962 | 567 | Pfam | C2H2-type zinc finger | 474 | 498 | - | - | |
| Apr1g0962 | 567 | Pfam | C2H2-type zinc finger | 13 | 35 | - | - | |
| Apr1g0962 | 567 | Pfam | C2H2-type zinc finger | 101 | 123 | - | - | |
| Apr1g0962 | 567 | Gene3D | Classic Zinc Finger | 3 | 126 | - | - | |
| Apr1g0962 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 378 | 405 | IPR013087 | - | |
| Apr1g0962 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 474 | 496 | IPR013087 | - | |
| Apr1g0962 | 567 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 13 | 40 | IPR013087 | - | |
| Apr1g0962 | 567 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
| Apr1g0962 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 380 | 400 | IPR013087 | - | |
| Apr1g0962 | 567 | SMART | c2h2final6 | 474 | 496 | IPR013087 | - | |
| Apr1g0962 | 567 | SMART | c2h2final6 | 378 | 400 | IPR013087 | - | |
| Apr1g0962 | 567 | SMART | c2h2final6 | 13 | 35 | IPR013087 | - | |
| Apr1g0962 | 567 | SMART | c2h2final6 | 99 | 121 | IPR013087 | - | |
| Apr1g0962 | 567 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 5 | 567 | - | - | |
| Apr1g0962 | 567 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 15 | 35 | IPR013087 | - | |
| Apr1g0962 | 567 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 5 | 567 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr1g0962 | Apr-Chr1 | 14205267 | 14207778 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr1g0962 | 365 | 539 | C2H2 Transcription Factor Family | AT2G45120 | 39.429 | 4.35e-27 | 110 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Apr1g0962 | zf-C2H2_6 | 3.6e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g0962 | - | - | aprc:113852386 | 1142.49 |